RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795983 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
780187 780187 PRJNA795983_S_NODE_38101_length_247_cov_4.695402_g37976_i0 PRJNA795983 38101 247 4.695402 11.59764294 Synchytrium microbalum 1806994 Fungi Fungi 139 1.67e-28   NTclustered gi|1759154818|ref|XM_031169817.1| 1806994 g37976 i0 88.034 29.5060728744939 117 14 47 0 1 117 121 237 Synchytrium microbalum uncharacterized protein (SmJEL517_g03889), partial mRNA blastn 7288 139 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
2056046 2056046 PRJNA795983_S_NODE_31102_length_264_cov_1.612565_g30977_i0 PRJNA795983 31102 264 1.612565 4.2571716 Fimicolochytrium jonesii 1396493 Fungi Fungi 145 3.8699999999999995e-30   NTclustered gi|2432062176|ref|XM_053067666.1| 1396493 g30977 i0 81.215 1.15909090909091 181 32 68 2 34 213 55 234 Fimicolochytrium jonesii ribosomal protein S19e (EV422DRAFT_493303), partial mRNA blastn 306 145 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
7158657 7158657 PRJNA795983_S_NODE_41866_length_242_cov_1.739645_g41741_i0 PRJNA795983 41866 242 1.739645 4.2099409 Batrachochytrium dendrobatidis 109871 Fungi Fungi 121 5.889999999999999e-23   NTclustered gi|575480991|ref|XM_006679727.1| 684364 g41741 i0 81.046 1.49173553719008 153 27 63 2 32 183 176 25 Batrachochytrium dendrobatidis JAM81 uncharacterized protein (BATDEDRAFT_12294), partial mRNA blastn 361 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
10983946 10983946 PRJNA795983_S_NODE_14129_length_344_cov_1.715867_g14004_i0 PRJNA795983 14129 344 1.715867 5.90258248 Polychytrium aggregatum 110093 Fungi Fungi 270 8.249999999999999e-68   NTclustered gi|2432133245|ref|XM_053114647.1| 110093 g14004 i0 80.925 16.6220930232558 346 62 100 4 1 344 1276 933 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_596045), mRNA blastn 5718 270 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;