RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795983 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3768205 3768205 PRJNA795983_S_NODE_3263_length_594_cov_1.905950_g3143_i0 PRJNA795983 3263 594 1.90595 11.321343 Eukaryota 2759 Plants Plants 58.4 0.001   NTclustered gi|2089724583|gb|MZ446957.1| 78182 g3143 i0 100 2.51683501683502 31 0 5 0 260 290 1384 1414 Vitreochlamys ordinata strain NIES-882 pumilio family protein mRNA, partial cds blastn 1495 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Vitreochlamys Vitreochlamys ordinata
7158363 7158363 PRJNA795983_S_NODE_14906_length_338_cov_1.550943_g14781_i0 PRJNA795983 14906 338 1.550943 5.24218734 Chlamydomonas reinhardtii 3055 Plants Plants 231 3.8199999999999995e-56   NTclustered gi|2082238142|ref|XM_043059158.1| 3055 g14781 i0 81.786 6.52958579881657 280 47 82 4 2 279 1189 1466 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g076350v5), mRNA blastn 2207 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7158477 7158477 PRJNA795983_S_NODE_25886_length_282_cov_1.095694_g25761_i0 PRJNA795983 25886 282 1.095694 3.08985708 Volvox carteri 3067 Plants Plants 52.8 0.026   NTclustered gi|302835573|ref|XM_002949302.1| 3068 g25761 i0 100 0.099290780141844 28 0 10 0 175 202 1494 1467 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_89720), partial mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
8869688 8869688 PRJNA795983_S_NODE_23607_length_290_cov_5.313364_g23482_i0 PRJNA795983 23607 290 5.313364 15.4087556 Opisthokonta 33154 Plants Plants 99 3.4e-16   NTclustered gi|612395756|ref|XM_007513336.1| 41875 g23482 i0 80.303 1.89310344827586 132 24 45 2 104 234 171 41 Bathycoccus prasinos 40S ribosomal protein S29 (Bathy04g01450), partial mRNA blastn 549 100 0.99 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
13533628 13533628 PRJNA795983_S_NODE_17411_length_321_cov_2.729839_g17286_i0 PRJNA795983 17411 321 2.729839 8.76278319 Micromonas pusilla 38833 Plants Plants 287 7.580000000000001e-73   NTclustered gi|303286420|ref|XM_003062454.1| 564608 g17286 i0 88.285 74.0436137071651 239 28 74 0 81 319 51 289 Micromonas pusilla CCMP1545 alpha tubulin (TUA2), mRNA blastn 23768 287 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
18631761 18631761 PRJNA795983_S_NODE_43835_length_235_cov_2.049383_g43710_i0 PRJNA795983 43835 235 2.049383 4.81605005 Micromonas pusilla 38833 Plants Plants 158 4.34e-34   NTclustered gi|303271766|ref|XM_003055199.1| 564608 g43710 i0 84.713 43.336170212766 157 24 67 0 75 231 188 32 Micromonas pusilla CCMP1545 uncharacterized protein (MICPUCDRAFT_37283), mRNA blastn 10184 158 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
21618672 21618672 PRJNA795983_S_NODE_9577_length_394_cov_2.660436_g9452_i0 PRJNA795983 9577 394 2.660436 10.48211784 Chlorophyta 3041 Plants Plants 496 1.45e-135   NTclustered gi|167449|gb|M11448.1|CRETBA2A 3055 g9452 i0 89.34 98.1065989847716 394 42 100 0 1 394 925 1318 Chlamydomonas reinhardtii alpha-2 tubulin gene, complete cds blastn 38654 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;