RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA795983 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8869702 8869702 PRJNA795983_S_NODE_31987_length_261_cov_3.042553_g31862_i0 PRJNA795983 31987 261 3.042553 7.94106333 Bdellovibrio 958 Bacteria Bacteria 220 6.17e-53   NTclustered gi|2800920897|gb|CP168968.1| 959 g31862 i0 90.909 72.3180076628352 165 13 78 2 53 215 1608017 1607853 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 18875 222 0.990990990990991 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
21618630 21618630 PRJNA795983_S_NODE_22097_length_297_cov_1.808036_g21972_i0 PRJNA795983 22097 297 1.808036 5.36986692 Pseudobdellovibrio 2862745 Bacteria Bacteria 276 1.5e-69   NTclustered gi|507148233|ref|NR_103040.1| 453816 g21972 i0 83.784 79.4713804713805 296 42 99 6 1 293 1265 1557 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 23603 276 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
24168119 24168119 PRJNA795983_S_NODE_29119_length_270_cov_3.680203_g28994_i0 PRJNA795983 29119 270 3.680203 9.9365481 Pseudobdellovibrio 2862745 Bacteria Bacteria 147 1.1000000000000001e-30   NTclustered gi|507148233|ref|NR_103040.1| 453816 g28994 i0 90.826 134.077777777778 109 10 40 0 160 268 126 18 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 36201 147 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;