RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA795983 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3331128 3331128 PRJNA795983_S_NODE_18583_length_315_cov_1.272727_g18458_i0 PRJNA795983 18583 315 1.272727 4.00909005 Plasmodium inui 52288 SAR_Eukaryotes SAR_Eukaryotes 176 1.68e-39   NTclustered gi|672192570|ref|XM_008817645.1| 1237626 g18458 i0 80.508 34.2761904761905 236 40 74 6 34 266 166 398 Plasmodium inui San Antonio 1 40S ribosomal protein S11 partial mRNA blastn 10797 176 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium inui
13533658 13533658 PRJNA795983_S_NODE_21211_length_301_cov_2.486842_g21086_i0 PRJNA795983 21211 301 2.486842 7.48539442 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 307 5.41e-79   NTclustered gi|1027950138|ref|XM_016797486.1| 31271 g21086 i0 85.235 203.598006644518 298 44 99 0 4 301 839 542 Plasmodium chabaudi chabaudi polyubiquitin (PCHAS_0612000), partial mRNA blastn 61283 307 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
17358524 17358524 PRJNA795983_S_NODE_34894_length_253_cov_1.711111_g34769_i0 PRJNA795983 34894 253 1.711111 4.32911083 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|669195911|ref|XM_008624745.1| 54757 g34769 i0 100 0.114624505928854 29 0 11 0 169 197 3017 3045 Plasmodium vinckei vinckei CCR4-associated factor 1, putative (PVVCY_1402810), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
23733134 23733134 PRJNA795983_S_NODE_9859_length_390_cov_2.526814_g9734_i0 PRJNA795983 9859 390 2.526814 9.8545746 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 339 2.5499999999999997e-88   NTclustered gi|1620122625|ref|XM_028672062.1| 5849 g9734 i0 83.379 85.3641025641026 367 59 94 2 25 390 16 381 Plasmodium gallinaceum calmodulin, putative (CAM), partial mRNA blastn 33292 339 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;