RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA795983 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3768205 3768205 PRJNA795983_S_NODE_3263_length_594_cov_1.905950_g3143_i0 PRJNA795983 3263 594 1.90595 11.321343 Eukaryota 2759 Plants Plants 58.4 0.001   NTclustered gi|2089724583|gb|MZ446957.1| 78182 g3143 i0 100 2.51683501683502 31 0 5 0 260 290 1384 1414 Vitreochlamys ordinata strain NIES-882 pumilio family protein mRNA, partial cds blastn 1495 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Vitreochlamys Vitreochlamys ordinata
7158363 7158363 PRJNA795983_S_NODE_14906_length_338_cov_1.550943_g14781_i0 PRJNA795983 14906 338 1.550943 5.24218734 Chlamydomonas reinhardtii 3055 Plants Plants 231 3.8199999999999995e-56   NTclustered gi|2082238142|ref|XM_043059158.1| 3055 g14781 i0 81.786 6.52958579881657 280 47 82 4 2 279 1189 1466 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g076350v5), mRNA blastn 2207 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7158477 7158477 PRJNA795983_S_NODE_25886_length_282_cov_1.095694_g25761_i0 PRJNA795983 25886 282 1.095694 3.08985708 Volvox carteri 3067 Plants Plants 52.8 0.026   NTclustered gi|302835573|ref|XM_002949302.1| 3068 g25761 i0 100 0.099290780141844 28 0 10 0 175 202 1494 1467 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_89720), partial mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
21618672 21618672 PRJNA795983_S_NODE_9577_length_394_cov_2.660436_g9452_i0 PRJNA795983 9577 394 2.660436 10.48211784 Chlorophyta 3041 Plants Plants 496 1.45e-135   NTclustered gi|167449|gb|M11448.1|CRETBA2A 3055 g9452 i0 89.34 98.1065989847716 394 42 100 0 1 394 925 1318 Chlamydomonas reinhardtii alpha-2 tubulin gene, complete cds blastn 38654 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;