RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA795663" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA795663 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14808127 14808127 PRJNA795663_S_NODE_8752_length_204_cov_1.604790_g8647_i0 PRJNA795663 8752 204 1.60479 3.2737716 Thecamoeba similis 242545 Discosea other_Eukaryota 178 2.81e-40   NTclustered gi|33946350|gb|AY294154.1| 242545 g8647 i0 83.957 18.3921568627451 187 28 91 2 8 193 657 842 Thecamoeba similis actin mRNA, complete cds blastn 3752 178 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
21181930 21181930 PRJNA795663_S_NODE_3617_length_303_cov_4.383459_g3512_i0 PRJNA795663 3617 303 4.383459 13.28188077 uncultured Vannellidae 544561 Discosea other_Eukaryota 246 1.21e-60   NTclustered gi|724028230|gb|KP099889.1| 544561 g3512 i0 81.699 43.1551155115512 306 47 100 8 1 303 539 838 Uncultured Vannellidae clone b18 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13076 246 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
25005808 25005808 PRJNA795663_S_NODE_1860_length_410_cov_12.163539_g1755_i0 PRJNA795663 1860 410 12.163539 49.8705099 uncultured Vannellidae 544561 Discosea other_Eukaryota 161 6.27e-35   NTclustered gi|724028223|gb|KP099882.1| 544561 g1755 i0 97.849 19.780487804878 93 2 23 0 1 93 831 923 Uncultured Vannellidae clone b25 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8110 161 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;