RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA795663" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA795663 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4607909 4607909 PRJNA795663_S_NODE_7384_length_219_cov_3.543956_g7279_i0 PRJNA795663 7384 219 3.543956 7.76126364 Gammaretrovirus murleu 3428959 Viruses Viruses 388 1.3e-103   NTclustered gi|1167936572|gb|KY574505.1| 11786 g7279 i0 98.63 99.8904109589041 219 3 100 0 1 219 5667 5449 Murine leukemia virus isolate AKR-L3, complete genome blastn 21876 388 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
14807877 14807877 PRJNA795663_S_NODE_13072_length_173_cov_2.514706_g12967_i0 PRJNA795663 13072 173 2.514706 4.35044138 Gammaretrovirus murleu 3428959 Viruses Viruses 315 1.68e-81   NTclustered gi|1167936811|gb|KY574513.1| 11786 g12967 i0 99.422 99.5086705202312 173 1 100 0 1 173 6520 6348 Murine leukemia virus isolate C58v2-MCF, complete genome blastn 17215 315 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22456514 22456514 PRJNA795663_S_NODE_16798_length_157_cov_1.341667_g16693_i0 PRJNA795663 16798 157 1.341667 2.10641719 Gammaretrovirus murleu 3428959 Viruses Viruses 285 1.17e-72   NTclustered gi|336462523|gb|JF908817.1| 11837 g16693 i0 99.363 100 157 1 100 0 1 157 3935 4091 Xenotropic murine leukemia virus isolate EKVX, partial genome blastn 15700 285 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
23732108 23732108 PRJNA795663_S_NODE_12559_length_176_cov_1.964029_g12454_i0 PRJNA795663 12559 176 1.964029 3.45669104 Gammaretrovirus murleu 3428959 Viruses Viruses 315 1.7199999999999996e-81   NTclustered gi|996271182|gb|KU324806.1| 11786 g12454 i0 98.864 100 176 2 100 0 1 176 2033 2208 Murine leukemia virus isolate Kyushu, complete genome blastn 17600 315 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;