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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA793147" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 13 ✖

bioproject 1

  • PRJNA793147 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2054139 2054139 PRJNA793147_P_NODE_57762_length_229_cov_1.437500_g57496_i0 PRJNA793147 57762 229 1.4375 3.291875 Lentivirus capartenc 3418647 Viruses Viruses 195 3.21e-45   NTclustered gi|1009428314|gb|KT898826.1| 254355 g57496 i0 82.231 27.5414847161572 242 28 100 10 1 229 8802 9041 Small ruminant lentivirus isolate Jord1, complete genome blastn 6307 195 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus capartenc
4606063 4606063 PRJNA793147_P_NODE_31284_length_299_cov_2.004348_g31018_i0 PRJNA793147 31284 299 2.004348 5.99300052 Lentivirus capartenc 3418647 Viruses Viruses 318 2.48e-82   NTclustered gi|1669294867|gb|MK503987.1| 254355 g31018 i0 92.727 58.7190635451505 220 16 74 0 1 220 220 1 Small ruminant lentivirus gag protein gene, partial cds blastn 17557 318 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus capartenc
7156472 7156472 PRJNA793147_P_NODE_51426_length_235_cov_0.867470_g51160_i0 PRJNA793147 51426 235 0.86747 2.0385545 Badnavirus alphananas 3048270 Viruses Viruses 407 3.9e-109   NTclustered gi|1827635586|dbj|LC507821.1| 2033633 g51160 i0 97.872 5.34042553191489 235 5 100 0 1 235 5073 4839 Pineapple bacilliform CO virus PBCOV genomic RNA, complete genome blastn 1255 407 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus alphananas
8430933 8430933 PRJNA793147_P_NODE_36867_length_277_cov_1.216346_g36601_i0 PRJNA793147 36867 277 1.216346 3.36927842 Badnavirus alphananas 3048270 Viruses Viruses 462 9.929999999999999e-126   NTclustered gi|1827635586|dbj|LC507821.1| 2033633 g36601 i0 96.751 3.93140794223827 277 9 100 0 1 277 4112 3836 Pineapple bacilliform CO virus PBCOV genomic RNA, complete genome blastn 1089 462 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus alphananas
8431174 8431174 PRJNA793147_P_NODE_50007_length_237_cov_1.154762_g49741_i0 PRJNA793147 50007 237 1.154762 2.73678594 Lentivirus capartenc 3418647 Viruses Viruses 276 1.16e-69   NTclustered gi|2872231180|gb|PP278022.1| 254355 g49741 i0 88.261 38.8607594936709 230 27 97 0 6 235 283 512 Small ruminant lentivirus isolate 13 gag polyprotein gene, partial cds blastn 9210 276 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus capartenc
10981460 10981460 PRJNA793147_P_NODE_21549_length_359_cov_1.700000_g21283_i0 PRJNA793147 21549 359 1.7 6.103 Lentivirus ovivismae 3418652 Viruses Viruses 431 3.74e-116   NTclustered gi|2716369137|gb|PP591900.1| 2169971 g21283 i0 88.301 2.008356545961 359 42 100 0 1 359 5590 5948 Visna-maedi virus isolate MVV-NM1, complete genome blastn 721 431 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus ovivismae
10982365 10982365 PRJNA793147_P_NODE_9_length_7916_cov_21.465273_g8_i0 PRJNA793147 9 7916 21.465273 1699.19101068 RD114 retrovirus 11834 Viruses Viruses 14229 0   NTclustered gi|306482054|dbj|AB559882.1| 11834 g8 i0 99.922 63.7623799898939 7723 6 100 0 1 7723 593 8315 RD114 retrovirus proviral DNA, complete genome, strain: CRT1 blastn 504743 14229 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus RD114 retrovirus
13969795 13969795 PRJNA793147_P_NODE_30011_length_305_cov_1.525424_g29745_i0 PRJNA793147 30011 305 1.525424 4.6525432 root 1 Root_unresolved Root_unresolved 503 6.53e-138   NTclustered gi|6911273|gb|AF228550.1|AF228550 114183 g29745 i0 96.393 23.2754098360656 305 11 100 0 1 305 3657 3353 Endogenous mouse mammary tumor virus Mtv1 complete proviral genome blastn 7099 503 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
16080407 16080407 PRJNA793147_P_NODE_42733_length_258_cov_1.338624_g42467_i0 PRJNA793147 42733 258 1.338624 3.45364992 Lentivirus capartenc 3418647 Viruses Viruses 219 2.19e-52   NTclustered gi|1009428314|gb|KT898826.1| 254355 g42467 i0 82.946 1 258 28 95 11 3 247 9054 8800 Small ruminant lentivirus isolate Jord1, complete genome blastn 258 219 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus capartenc
18628972 18628972 PRJNA793147_P_NODE_14055_length_454_cov_2.296104_g13789_i0 PRJNA793147 14055 454 2.296104 10.42431216 Lentivirus ovivismae 3418652 Viruses Viruses 529 1.6699999999999992e-145   NTclustered gi|2716369137|gb|PP591900.1| 2169971 g13789 i0 87.665 2 454 56 100 0 1 454 6742 7195 Visna-maedi virus isolate MVV-NM1, complete genome blastn 908 529 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus ovivismae
19904200 19904200 PRJNA793147_P_NODE_16696_length_412_cov_1.848397_g16430_i0 PRJNA793147 16696 412 1.848397 7.61539564 Lentivirus ovivismae 3418652 Viruses Viruses 318 3.54e-82   NTclustered gi|2029767964|gb|MW248464.1| 2169971 g16430 i0 83.578 0.827669902912621 341 54 83 2 64 403 6127 6466 Visna-maedi virus strain NM1111, complete genome blastn 341 318 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus ovivismae
21180222 21180222 PRJNA793147_P_NODE_32437_length_294_cov_1.751111_g32171_i0 PRJNA793147 32437 294 1.751111 5.14826634 Lentivirus ovivismae 3418652 Viruses Viruses 433 8.34e-117   NTclustered gi|2716369137|gb|PP591900.1| 2169971 g32171 i0 93.197 10.608843537415 294 20 100 0 1 294 8313 8020 Visna-maedi virus isolate MVV-NM1, complete genome blastn 3119 433 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus ovivismae
23730800 23730800 PRJNA793147_P_NODE_45639_length_249_cov_1.600000_g45373_i0 PRJNA793147 45639 249 1.6 3.984 Lentivirus ovivismae 3418652 Viruses Viruses 326 1.2e-84   NTclustered gi|2716369137|gb|PP591900.1| 2169971 g45373 i0 90.323 0.995983935742972 248 24 99 0 2 249 5612 5365 Visna-maedi virus isolate MVV-NM1, complete genome blastn 248 326 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus ovivismae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;