RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA793147" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA793147 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9705604 9705604 PRJNA793147_P_NODE_12588_length_484_cov_1.730120_g12322_i0 PRJNA793147 12588 484 1.73012 8.3737808 Dictyostelium purpureum 5786 Evosea other_Eukaryota 375 2.4599999999999995e-99   NTclustered gi|330805726|ref|XM_003290782.1| 5786 g12322 i0 81.585 30.1611570247934 467 74 95 11 22 482 1420 1880 Dictyostelium purpureum cell division cycle protein 48 (DICPUDRAFT_81538), partial mRNA blastn 14598 375 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11419780 11419780 PRJNA793147_P_NODE_32789_length_293_cov_1.285714_g32523_i0 PRJNA793147 32789 293 1.285714 3.76714202 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.2 1.62e-4   NTclustered gi|330814778|ref|XM_003291360.1| 5786 g32523 i0 97.143 0.48122866894198 35 1 12 0 19 53 1316 1350 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_57310), partial mRNA blastn 141 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
22455305 22455305 PRJNA793147_P_NODE_51598_length_234_cov_2.618182_g51332_i0 PRJNA793147 51598 234 2.618182 6.12654588 Dictyostelium discoideum 44689 Evosea other_Eukaryota 122 1.5699999999999994e-23   NTclustered gi|111218959|ref|XM_001134475.1| 352472 g51332 i0 78.571 1.44017094017094 196 35 82 6 23 214 210 18 Dictyostelium discoideum AX4 hypothetical protein (fttB) mRNA, complete cds blastn 337 122 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;