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contig_metadata

34 rows where analysis = "blastn", bioproject = "PRJNA792582" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 34 ✖

tax_clade 1

bioproject 1

  • PRJNA792582 · 34 ✖

analysis 1

  • blastn · 34 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
776965 776965 PRJNA792582_P_NODE_42481_length_271_cov_1.550505_g41667_i0 PRJNA792582 42481 271 1.550505 4.20186855 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 193 1.3999999999999998e-44   NTclustered gi|2795027172|ref|XM_067926257.1| 4785 g41667 i0 83.099 14.4723247232472 213 34 78 2 58 269 1108 1319 Phytophthora cinnamomi citrate (Si)-synthase, eukaryotic (IUM83_02347), partial mRNA blastn 3922 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
777017 777017 PRJNA792582_P_NODE_46521_length_260_cov_1.229947_g45707_i0 PRJNA792582 46521 260 1.229947 3.1978622 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 279 9.98e-71   NTclustered gi|673015481|ref|XM_008863480.1| 157072 g45707 i0 91.584 62.5846153846154 202 17 78 0 1 202 200 401 Aphanomyces invadans 60S ribosomal protein L44 mRNA blastn 16272 279 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
777090 777090 PRJNA792582_P_NODE_52781_length_248_cov_0.880000_g51967_i0 PRJNA792582 52781 248 0.88 2.1824 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 267 7.36e-67   NTclustered gi|2795059095|ref|XM_067933458.1| 4785 g51967 i0 86.179 35.8548387096774 246 34 99 0 3 248 899 654 Phytophthora cinnamomi malate dehydrogenase, NAD-dependent (IUM83_09043), partial mRNA blastn 8892 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
777130 777130 PRJNA792582_P_NODE_56421_length_244_cov_0.900585_g55607_i0 PRJNA792582 56421 244 0.900585 2.1974274 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 307 4.25e-79   NTclustered gi|813177544|ref|XM_012349852.1| 695850 g55607 i0 89.669 7.37704918032787 242 23 99 2 1 241 325 565 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 1800 307 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
3328335 3328335 PRJNA792582_P_NODE_55883_length_245_cov_0.895349_g55069_i0 PRJNA792582 55883 245 0.895349 2.19360505 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 270 5.609999999999999e-68   NTclustered gi|2795019585|ref|XM_067931629.1| 4785 g55069 i0 87.607 47.3755102040816 234 27 95 2 8 240 269 37 Phytophthora cinnamomi peptidyl-prolyl cis-trans isomerase (IUM83_07343), partial mRNA blastn 11607 270 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
4605511 4605511 PRJNA792582_P_NODE_55004_length_246_cov_0.890173_g54190_i0 PRJNA792582 55004 246 0.890173 2.18982558 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 281 2.6000000000000007e-71   NTclustered gi|301113823|ref|XM_002998636.1| 403677 g54190 i0 87.866 33.6707317073171 239 29 97 0 2 240 175 413 Phytophthora infestans T30-4 ATP synthase subunit beta, putative (PITG_06595), partial mRNA blastn 8283 281 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
5880435 5880435 PRJNA792582_P_NODE_37565_length_284_cov_1.459716_g36751_i0 PRJNA792582 37565 284 1.459716 4.14559344 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 361 3.8399999999999996e-95   NTclustered gi|2795037587|ref|XM_067935188.1| 4785 g36751 i0 91.635 61.1232394366197 263 18 92 4 11 271 261 1 Phytophthora cinnamomi 60S ribosomal protein L5 (IUM83_10672), partial mRNA blastn 17359 361 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
5880689 5880689 PRJNA792582_P_NODE_56905_length_244_cov_0.900585_g56091_i0 PRJNA792582 56905 244 0.900585 2.1974274 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 279 9.27e-71   NTclustered gi|695388022|ref|XM_009520775.1| 67593 g56091 i0 87.295 6.22540983606557 244 31 100 0 1 244 1285 1528 Phytophthora sojae hypothetical protein partial mRNA blastn 1519 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
6319269 6319269 PRJNA792582_P_NODE_10025_length_536_cov_1.453564_g9220_i0 PRJNA792582 10025 536 1.453564 7.79110304 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 520 1.2e-142   NTclustered gi|23394353|gb|AF424642.1| 4787 g9220 i0 86.128 77.0410447761194 483 65 90 2 55 536 39 520 Phytophthora infestans clone MY-03-E-01 ADP/ATP translocase mRNA, complete cds blastn 41294 520 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
7593513 7593513 PRJNA792582_P_NODE_37766_length_283_cov_5.957143_g36952_i0 PRJNA792582 37766 283 5.957143 16.85871469 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 523 4.5999999999999983e-144   NTclustered gi|2832795190|gb|PQ465262.1| 88834 g36952 i0 100 99.5371024734982 283 0 100 0 1 283 2998 3280 Pythium porphyrae isolate Bangia fuscopurpurea small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28169 523 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium porphyrae
7593673 7593673 PRJNA792582_P_NODE_52486_length_248_cov_1.320000_g51672_i0 PRJNA792582 52486 248 1.32 3.2736 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 248 2.67e-61   NTclustered gi|2794904931|ref|XM_067889676.1| 164328 g51672 i0 84.739 81.6572580645161 249 36 100 2 1 248 601 354 Phytophthora ramorum 60S ribosomal protein L10a-1 (KRP23_4687), partial mRNA blastn 20251 248 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
8430084 8430084 PRJNA792582_P_NODE_36447_length_287_cov_1.439252_g35633_i0 PRJNA792582 36447 287 1.439252 4.13065324 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 520 6.049999999999999e-143   NTclustered gi|166046486|emb|CU367603.1| 100861 g35633 i0 99.306 40.6829268292683 288 1 100 1 1 287 368 81 Aphanomyces euteiches cDNA blastn 11676 520 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
8868755 8868755 PRJNA792582_P_NODE_57987_length_242_cov_1.822485_g57173_i0 PRJNA792582 57987 242 1.822485 4.4104137 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 200 7.359999999999999e-47   NTclustered gi|673020635|ref|XM_008866057.1| 157072 g57173 i0 81.633 89.3636363636364 245 41 100 3 1 242 1312 1069 Aphanomyces invadans dihydrolipoyl dehydrogenase mRNA blastn 21626 200 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
9705103 9705103 PRJNA792582_P_NODE_18048_length_405_cov_2.277108_g17234_i0 PRJNA792582 18048 405 2.277108 9.2222874 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 636 8.429999999999999e-178   NTclustered gi|166044578|emb|CU367487.1| 100861 g17234 i0 95.157 54.2592592592593 413 2 98 1 11 405 1 413 Aphanomyces euteiches cDNA blastn 21975 636 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9705347 9705347 PRJNA792582_P_NODE_45628_length_262_cov_2.158730_g44814_i0 PRJNA792582 45628 262 2.15873 5.6558726 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 484 1.99e-132   NTclustered gi|166046734|emb|CU367844.1| 100861 g44814 i0 100 14.8282442748092 262 0 100 0 1 262 544 283 Aphanomyces euteiches cDNA blastn 3885 484 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
10143978 10143978 PRJNA792582_P_NODE_42108_length_272_cov_1.547739_g41294_i0 PRJNA792582 42108 272 1.547739 4.20985008 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 71.3 6.89e-8   NTclustered gi|325190425|emb|FR824310.1| 890382 g41294 i0 82.143 0.617647058823529 84 14 31 1 6 89 14115 14033 Albugo laibachii Nc14, genomic contig CONTIG_265_NC14_v4_35902_248 blastn 168 71.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
10980816 10980816 PRJNA792582_P_NODE_25449_length_342_cov_2.933086_g24635_i0 PRJNA792582 25449 342 2.933086 10.03115412 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 383 1.01e-101   NTclustered gi|695452201|ref|XM_009537621.1| 67593 g24635 i0 89.899 85.7485380116959 297 30 87 0 3 299 317 613 Phytophthora sojae hypothetical protein mRNA blastn 29326 383 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10981114 10981114 PRJNA792582_P_NODE_53769_length_247_cov_0.885057_g52955_i0 PRJNA792582 53769 247 0.885057 2.18609079 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 324 4.2799999999999995e-84   NTclustered gi|166034655|emb|CU356692.1| 100861 g52955 i0 90.283 4.93117408906883 247 24 100 0 1 247 125 371 Aphanomyces euteiches cDNA blastn 1218 324 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12256355 12256355 PRJNA792582_P_NODE_15830_length_433_cov_1.666667_g15016_i0 PRJNA792582 15830 433 1.666667 7.21666811 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 800 0   NTclustered gi|1923460157|gb|MW187635.1| 1982524 g15016 i0 100 101.011547344111 433 0 100 0 1 433 460 28 Aphanomyces sp. isolate CCRJB_30 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 43738 800 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
12256755 12256755 PRJNA792582_P_NODE_56650_length_244_cov_0.900585_g55836_i0 PRJNA792582 56650 244 0.900585 2.1974274 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 302 1.98e-77   NTclustered gi|695442709|ref|XM_009535227.1| 67593 g55836 i0 88.934 16.3606557377049 244 27 100 0 1 244 229 472 Phytophthora sojae hypothetical protein partial mRNA blastn 3992 302 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
13530729 13530729 PRJNA792582_P_NODE_49051_length_252_cov_2.184358_g48237_i0 PRJNA792582 49051 252 2.184358 5.50458216 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 466 6.89e-127   NTclustered gi|166044600|emb|CU367509.1| 100861 g48237 i0 100 98.8611111111111 252 0 100 0 1 252 97 348 Aphanomyces euteiches cDNA blastn 24913 466 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
14805676 14805676 PRJNA792582_P_NODE_49272_length_252_cov_1.279330_g48458_i0 PRJNA792582 49272 252 1.27933 3.2239116 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 431 2.5099999999999992e-116   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g48458 i0 97.619 104.666666666667 252 5 99 1 1 251 3747 3998 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 26376 431 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
14805748 14805748 PRJNA792582_P_NODE_55232_length_245_cov_1.761628_g54418_i0 PRJNA792582 55232 245 1.761628 4.3159886 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 220 5.73e-53   NTclustered gi|145843809|gb|EF564003.1| 164328 g54418 i0 82.927 4.92244897959184 246 40 100 2 1 245 586 342 Phytophthora ramorum cellulose synthase 3 (CES3) gene, complete cds blastn 1206 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
16079406 16079406 PRJNA792582_P_NODE_31173_length_310_cov_1.822785_g30359_i0 PRJNA792582 31173 310 1.822785 5.6506335 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 429 1.15e-115   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g30359 i0 91.613 122.612903225806 310 26 100 0 1 310 371 62 Aphanomyces astaci polyubiquitin mRNA blastn 38010 429 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16518544 16518544 PRJNA792582_P_NODE_8713_length_572_cov_3.869739_g7917_i0 PRJNA792582 8713 572 3.869739 22.13490708 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 883 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g7917 i0 94.618 106.912587412587 576 22 100 9 1 572 3075 2505 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 61154 883 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
17355442 17355442 PRJNA792582_P_NODE_52774_length_248_cov_0.880000_g51960_i0 PRJNA792582 52774 248 0.88 2.1824 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 235 2.08e-57   NTclustered gi|2795049423|ref|XM_067943189.1| 4785 g51960 i0 86.574 6 216 25 86 4 35 248 911 698 Phytophthora cinnamomi Spermidine synthase (IUM83_18204), partial mRNA blastn 1488 235 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
19903666 19903666 PRJNA792582_P_NODE_2716_length_975_cov_5.862528_g2152_i0 PRJNA792582 2716 975 5.862528 57.159648 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 1578 0   NTclustered gi|937408816|ref|NC_027966.1| 114742 g2152 i0 95.812 103.836923076923 979 37 100 2 1 975 11623 10645 Pythium insidiosum mitochondrial DNA, complete genome blastn 101241 1578 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
19903688 19903688 PRJNA792582_P_NODE_30196_length_314_cov_0.958506_g29382_i0 PRJNA792582 30196 314 0.958506 3.00970884 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 303 7.35e-78   NTclustered gi|675170410|ref|XM_008895842.1| 761204 g29382 i0 84.74 58.8535031847134 308 42 98 4 6 312 1070 1373 Phytophthora parasitica INRA-310 chaperonin GroL partial mRNA blastn 18480 303 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
21617431 21617431 PRJNA792582_P_NODE_21677_length_370_cov_1.474747_g20863_i0 PRJNA792582 21677 370 1.474747 5.4565639 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 518 2.88e-142   NTclustered gi|50261276|ref|NC_005984.1| 4770 g20863 i0 91.892 98.5891891891892 370 30 100 0 1 370 15661 15292 Saprolegnia ferax mitochondrion, complete genome blastn 36478 521 0.994241842610365 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
22454102 22454102 PRJNA792582_P_NODE_23118_length_358_cov_2.729825_g22304_i0 PRJNA792582 23118 358 2.729825 9.7727735 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 603 7.459999999999999e-168   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g22304 i0 96.953 109.790502793296 361 7 100 2 1 358 5923 6282 Achlya hypogyna mitochondrion, complete genome blastn 39305 603 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
22454287 22454287 PRJNA792582_P_NODE_42178_length_272_cov_1.417085_g41364_i0 PRJNA792582 42178 272 1.417085 3.8544712 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 497 2.67e-136   NTclustered gi|166044596|emb|CU367505.1| 100861 g41364 i0 99.632 93.8933823529412 272 1 100 0 1 272 391 120 Aphanomyces euteiches cDNA blastn 25539 497 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22454465 22454465 PRJNA792582_P_NODE_56858_length_244_cov_0.900585_g56044_i0 PRJNA792582 56858 244 0.900585 2.1974274 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 219 2.05e-52   NTclustered gi|695430289|ref|XM_009532110.1| 67593 g56044 i0 84.279 2.8155737704918 229 30 93 6 16 241 204 429 Phytophthora sojae hypothetical protein partial mRNA blastn 687 219 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23729875 23729875 PRJNA792582_P_NODE_39739_length_278_cov_2.009756_g38925_i0 PRJNA792582 39739 278 2.009756 5.58712168 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 514 2.7199999999999996e-141   NTclustered gi|166044475|emb|CU367384.1| 100861 g38925 i0 100 39.4460431654676 278 0 100 0 1 278 624 347 Aphanomyces euteiches cDNA blastn 10966 514 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25003383 25003383 PRJNA792582_P_NODE_33240_length_299_cov_1.349558_g32426_i0 PRJNA792582 33240 299 1.349558 4.03517842 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 355 1.8899999999999997e-93   NTclustered gi|698785476|ref|XM_009827480.1| 112090 g32426 i0 90.11 19.5886287625418 273 27 91 0 27 299 354 82 Aphanomyces astaci translation elongation factor aEF-2 mRNA blastn 5857 355 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;