RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA792582" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA792582 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
777186 777186 PRJNA792582_P_NODE_6681_length_645_cov_4.582168_g5899_i0 PRJNA792582 6681 645 4.582168 29.5549836 Lobosphaera incisa 312850 Plants Plants 106 4.85e-18   NTclustered gi|821316988|ref|NC_027060.1| 312850 g5899 i0 91.139 28.4837209302326 79 6 12 1 424 502 18726 18649 Lobosphaera incisa strain SAG 2468 mitochondrion, complete genome blastn 18372 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
8429945 8429945 PRJNA792582_P_NODE_20187_length_383_cov_1.490323_g19373_i0 PRJNA792582 20187 383 1.490323 5.70793709 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.037   NTclustered gi|2082244717|ref|XM_043061614.1| 3055 g19373 i0 100 0.0731070496083551 28 0 7 0 223 250 2583 2556 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_04g212400v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;