RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA792582" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA792582 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2052852 2052852 PRJNA792582_P_NODE_33602_length_297_cov_2.062500_g32788_i0 PRJNA792582 33602 297 2.0625 6.125625 Durinskia baltica diatom endosymbiont 1079368 SAR_Eukaryotes SAR_Eukaryotes 158 5.68e-34   NTclustered gi|347800972|gb|JN378735.1| 1079368 g32788 i0 90.756 39.952861952862 119 9 40 2 102 220 34471 34587 Endosymbiont of Durinskia baltica mitochondrion, partial genome blastn 11866 158 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae       Durinskia baltica diatom endosymbiont
14805736 14805736 PRJNA792582_P_NODE_54672_length_246_cov_0.890173_g53858_i0 PRJNA792582 54672 246 0.890173 2.18982558 Lithodesmioides sp. mgcode 4 2914905 SAR_Eukaryotes SAR_Eukaryotes 246 9.5e-61   NTclustered gi|2073953334|gb|MW849271.1| 2914905 g53858 i0 85.957 55.8780487804878 235 28 95 4 13 245 7723 7954 Lithodesmioides sp. mgcode 4 isolate Qingdao in China mitochondrion, complete genome blastn 13746 246 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Lithodesmioides Lithodesmioides sp. mgcode 4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;