RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA792582" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA792582 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3328068 3328068 PRJNA792582_P_NODE_33023_length_300_cov_1.356828_g32209_i0 PRJNA792582 33023 300 1.356828 4.070484 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 390 5.209999999999999e-104   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g32209 i0 90.132 176.2 304 25 100 5 1 300 1821090 1821392 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 52860 390 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
3767096 3767096 PRJNA792582_P_NODE_32643_length_302_cov_1.650655_g31829_i0 PRJNA792582 32643 302 1.650655 4.9849781 Bacteria 2 Bacteria Bacteria 335 2.49e-87   NTclustered gi|2874254061|emb|OY970385.1| 2026791 g31829 i0 87.755 284.033112582781 294 26 97 6 9 301 2775923 2776207 MAG: Bryobacterales bacterium isolate MFD03726.bin.c.1 genome assembly, chromosome: 1 blastn 85778 335 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
5880619 5880619 PRJNA792582_P_NODE_52385_length_248_cov_1.685714_g51571_i0 PRJNA792582 52385 248 1.685714 4.18057072 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 388 1.51e-103   NTclustered gi|2874254091|emb|OY970174.1| 171953 g51571 i0 95.161 440.931451612903 248 9 99 3 3 248 4356911 4357157 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 109351 388 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7155312 7155312 PRJNA792582_P_NODE_32806_length_301_cov_1.960526_g31992_i0 PRJNA792582 32806 301 1.960526 5.90118326 uncultured Bryobacterales bacterium 2569091 Bacteria Bacteria 237 7.210000000000001e-58   NTclustered gi|2546137838|emb|OY282420.1| 2569091 g31992 i0 81.373 210.906976744186 306 44 100 12 1 301 989741 990038 MAG: uncultured Bryobacterales bacterium isolate 78526416-339a-45b8-a6d3-8fabb82c2801 genome assembly, chromosome: 1 blastn 63483 237 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     uncultured Bryobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;