RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA792582" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA792582 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
777050 777050 PRJNA792582_P_NODE_49441_length_251_cov_1.730337_g48627_i0 PRJNA792582 49441 251 1.730337 4.34314587 Candidatus Ozemobacteraceae bacterium 2818468 Bacteria Bacteria 52.8 0.023   NTclustered gi|2907625676|emb|OZ223236.1| 2818468 g48627 i0 100 0.111553784860558 28 0 11 0 53 80 2192588 2192615 MAG: Candidatus Ozemobacteraceae bacterium isolate 4ee0fdf2-fbb4-4151-bfa0-813162405533 genome assembly, chromosome: 2 blastn 28 52.8 1 Bacteria Bacteria candidate phyla     Candidatus Ozemobacteria   Candidatus Ozemobacteraceae   Candidatus Ozemobacteraceae bacterium
12256718 12256718 PRJNA792582_P_NODE_52150_length_249_cov_0.875000_g51336_i0 PRJNA792582 52150 249 0.875 2.17875 Candidatus Saccharibacteria bacterium oral taxon 488 713059 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|1842065531|gb|CP040002.1| 713059 g51336 i0 99.197 147.18875502008 249 2 100 0 1 249 150804 150556 Candidatus Saccharibacteria bacterium oral taxon 488 strain AC002 chromosome, complete genome blastn 36650 449 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488
16079631 16079631 PRJNA792582_P_NODE_53073_length_248_cov_0.880000_g52259_i0 PRJNA792582 53073 248 0.88 2.1824 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 324 4.31e-84   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g52259 i0 92.478 79.4354838709677 226 17 91 0 3 228 814360 814135 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 19700 324 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;