RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA789095" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA789095 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2047145 2047145 PRJNA789095_P_NODE_61062_length_261_cov_1.744681_g59728_i0 PRJNA789095 61062 261 1.744681 4.55361741 Opisthorchis viverrini 6198 Platyhelminthes Platyhelminthes 71.3 6.57e-8   NTclustered gi|684394820|ref|XM_009172760.1| 6198 g59728 i0 100 0.145593869731801 38 0 15 0 223 260 2917 2880 Opisthorchis viverrini hypothetical protein partial mRNA blastn 38 71.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini
6318611 6318611 PRJNA789095_P_NODE_71325_length_245_cov_2.930233_g69991_i0 PRJNA789095 71325 245 2.930233 7.17907085 Metazoa 33208 Platyhelminthes Platyhelminthes 453 5.1900000000000006e-123   NTclustered gi|60599826|gb|AY810568.1| 6182 g69991 i0 100 25.7714285714286 245 0 100 0 1 245 79 323 Schistosoma japonicum clone SJCHGC08893 unknown mRNA blastn 6314 453 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
11418415 11418415 PRJNA789095_P_NODE_25749_length_437_cov_4.140110_g24417_i0 PRJNA789095 25749 437 4.14011 18.0922807 Metazoa 33208 Platyhelminthes Platyhelminthes 808 0   NTclustered gi|60600609|gb|AY810873.1| 6182 g24417 i0 100 42.8260869565217 437 0 100 0 1 437 546 110 Schistosoma japonicum clone SJCHGC07419 unknown mRNA blastn 18715 808 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;