RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA789095" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA789095 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3322000 3322000 PRJNA789095_P_NODE_45163_length_299_cov_1.305310_g43829_i0 PRJNA789095 45163 299 1.30531 3.9028769 Spumella sp. OF-40 1432661 SAR_Eukaryotes SAR_Eukaryotes 326 1.48e-84   NTclustered gi|677286268|gb|KF997856.1| 1432661 g43829 i0 86.288 85.6822742474916 299 41 100 0 1 299 1166 868 Spumella sp. OF-40 translation elongation factor 1-alpha (EF1A) mRNA, complete cds blastn 25619 326 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Spumella Spumella sp. OF-40
5874912 5874912 PRJNA789095_P_NODE_66825_length_250_cov_1.175141_g65491_i0 PRJNA789095 66825 250 1.175141 2.9378525 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 440 4.1399999999999976e-119   NTclustered gi|512134943|gb|JX178902.1| 1295638 g65491 i0 98.4 99.632 250 4 100 0 1 250 1080 1329 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24908 440 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
7149261 7149261 PRJNA789095_P_NODE_46226_length_296_cov_1.035874_g44892_i0 PRJNA789095 46226 296 1.035874 3.06618704 Actinosphaerium nucleofilum 238767 SAR_Eukaryotes SAR_Eukaryotes 246 1.1699999999999999e-60   NTclustered gi|33089895|gb|AY283757.1| 238767 g44892 i0 81.879 98.9966216216216 298 48 99 4 2 296 405 699 Actinosphaerium nucleofilum isolate Anu4_3 actin gene, partial cds blastn 29303 246 1 Eukaryota Sar     Actinophryidae     Actinosphaerium Actinosphaerium nucleofilum
8424465 8424465 PRJNA789095_P_NODE_64807_length_253_cov_1.322222_g63473_i0 PRJNA789095 64807 253 1.322222 3.34522166 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 351 2.02e-92   NTclustered gi|53829555|gb|AY582830.1| 289359 g63473 i0 92 20.3833992094862 250 20 99 0 4 253 620 371 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 5157 351 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
9699658 9699658 PRJNA789095_P_NODE_65788_length_251_cov_1.376404_g64454_i0 PRJNA789095 65788 251 1.376404 3.45477404 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|820700576|tpe|LN714500.1| 432359 g64454 i0 100 0.239043824701195 30 0 12 0 123 152 3700816 3700787 TPA_asm: Toxoplasma gondii VEG, chromosome chrX, complete genome blastn 60 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
10975100 10975100 PRJNA789095_P_NODE_57909_length_268_cov_1.579487_g56575_i0 PRJNA789095 57909 268 1.579487 4.23302516 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 383 7.66e-102   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g56575 i0 92.593 9.64179104477612 270 14 100 5 1 268 296 31 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 2584 383 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;