RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA789095" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA789095 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2046468 2046468 PRJNA789095_P_NODE_38222_length_326_cov_1.217391_g36888_i0 PRJNA789095 38222 326 1.217391 3.96869466 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 392 1.5899999999999994e-104   NTclustered gi|1002452927|ref|XM_015800798.1| 157538 g36888 i0 88.379 14.2883435582822 327 36 100 2 1 326 351 26 Leptomonas pyrrhocoris putative Ribosomal protein l3 mRNA blastn 4658 392 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
23724421 23724421 PRJNA789095_P_NODE_71679_length_245_cov_0.895349_g70345_i0 PRJNA789095 71679 245 0.895349 2.19360505 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 278 3.35e-70   NTclustered gi|290975420|ref|XM_002670395.1| 5762 g70345 i0 86.716 2.21224489795918 271 10 100 13 1 245 347 77 Naegleria gruberi VWFA domain-containing protein (NAEGRDRAFT_59701), mRNA blastn 542 278 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;