RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2045079 2045079 PRJNA788929_P_NODE_17402_length_397_cov_39.827160_g16743_i0 PRJNA788929 17402 397 39.82716 158.1138252 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 538 2.3899999999999992e-148   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g16743 i0 92.742 107.566750629723 372 27 94 0 1 372 1308935 1309306 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 42704 538 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
3766109 3766109 PRJNA788929_P_NODE_43123_length_238_cov_33.333333_g42462_i0 PRJNA788929 43123 238 33.333333 79.33333254 Rhodothermales 1853224 Bacteria Bacteria 292 1.1599999999999999e-74   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g42462 i0 90.909 187.689075630252 220 16 91 4 1 217 2906611 2906829 Rhodothermaceae bacterium RA chromosome, complete genome blastn 44670 292 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
4597503 4597503 PRJNA788929_P_NODE_23204_length_335_cov_11.656489_g22543_i0 PRJNA788929 23204 335 11.656489 39.04923815 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 206 2.29e-48   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g22543 i0 80.727 18.3731343283582 275 43 81 8 44 313 3151071 3150802 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 6155 206 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;