RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4597760 4597760 PRJNA788929_P_NODE_40404_length_245_cov_10.441860_g39743_i0 PRJNA788929 40404 245 10.44186 25.582557 Hyrtios reticulatus 1162751 Porifera other_Eukaryota 139 1.6499999999999999e-28   NTclustered gi|512765404|gb|KC869642.1| 1162751 g39743 i0 91.429 38.6571428571429 105 4 42 5 140 242 2047 2148 Hyrtios reticulatus voucher NCI426 28S ribosomal RNA gene, partial sequence blastn 9471 139 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Thorectidae Hyrtios Hyrtios reticulatus
10143029 10143029 PRJNA788929_P_NODE_8648_length_622_cov_25.655738_g7999_i0 PRJNA788929 8648 622 25.655738 159.57869036 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 213 2.67e-50   NTclustered gi|2719038895|ref|XR_010393624.1| 6063 g7999 i0 90.798 32.8938906752412 163 9 32 6 192 352 2167 2009 PREDICTED: Halichondria panicea large subunit ribosomal RNA (LOC135332780), rRNA blastn 20460 215 0.990697674418605 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
17792066 17792066 PRJNA788929_P_NODE_43134_length_238_cov_18.557576_g42473_i0 PRJNA788929 43134 238 18.557576 44.16703088 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 2.69e-21   NTclustered gi|512765374|gb|KC869612.1| 1183873 g42473 i0 85.217 47.3655462184874 115 13 48 4 34 147 2031 2142 Stelletta fibrosa voucher P24 28S ribosomal RNA gene, partial sequence blastn 11273 115 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Tetractinellida Geodiidae Geodia Geodia fibrosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;