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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2045030 2045030 PRJNA788929_P_NODE_14782_length_439_cov_62.363388_g14123_i0 PRJNA788929 14782 439 62.363388 273.77527332 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.012   NTclustered gi|1557394408|emb|LR031564.1| 45931 g14123 i0 100 0.0660592255125285 29 0 7 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3320611 3320611 PRJNA788929_P_NODE_30483_length_285_cov_23.245283_g29822_i0 PRJNA788929 30483 285 23.245283 66.24905655 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g29822 i0 100 0.0982456140350877 28 0 10 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3765816 3765816 PRJNA788929_P_NODE_10223_length_558_cov_33.868041_g9570_i0 PRJNA788929 10223 558 33.868041 188.98366878 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.004   NTclustered gi|1376138789|ref|XM_024649631.1| 34506 g9570 i0 94.595 0.489247311827957 37 0 6 2 154 188 1706 1670 Strongyloides ratti Voltage-dependent calcium channel type A subunit alpha-1 (SRAE_1000254200), partial mRNA blastn 273 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
4597391 4597391 PRJNA788929_P_NODE_16384_length_412_cov_57.598820_g15725_i0 PRJNA788929 16384 412 57.59882 237.3071384 Aphelenchoides sp. 2 HMM2018 2109771 Nematoda Nematoda 69.4 3.93e-7   NTclustered gi|1359463253|gb|KY750851.1| 2109771 g15725 i0 87.097 0.684466019417476 62 7 15 1 1 61 257 196 Aphelenchoides sp. 2 HMM2018 isolate HMM716 28S ribosomal RNA gene, partial sequence blastn 282 69.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides sp. 2 HMM2018
6318217 6318217 PRJNA788929_P_NODE_21925_length_347_cov_8.839416_g21264_i0 PRJNA788929 21925 347 8.839416 30.67277352 Panagrolaimus 55784 Nematoda Nematoda 512 1.25e-140   NTclustered gi|166014126|gb|EU253569.1| 55785 g21264 i0 95.077 96.1556195965418 325 16 94 0 23 347 2496 2820 Panagrolaimus sp. PS1159 28S large subunit ribosomal RNA gene, partial sequence blastn 33366 512 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159
7147682 7147682 PRJNA788929_P_NODE_18806_length_379_cov_45.758170_g18146_i0 PRJNA788929 18806 379 45.75817 173.4234643 Oscheius dolichura 473156 Nematoda Nematoda 582 1.04e-161   NTclustered gi|158821907|gb|EU195971.1| 473156 g18146 i0 97.376 91.2321899736148 343 8 91 1 25 367 1886 2227 Oscheius dolichura strain JU460 28S ribosomal RNA gene, partial sequence blastn 34577 582 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
8422215 8422215 PRJNA788929_P_NODE_12607_length_487_cov_7.236715_g11950_i0 PRJNA788929 12607 487 7.236715 35.24280205 Mecistocirrus digitatus 237660 Nematoda Nematoda 178 7.51e-40   NTclustered gi|288904190|ref|NC_013848.1| 237660 g11950 i0 77.204 56.9794661190965 329 59 66 14 83 402 13885 13564 Mecistocirrus digitatus mitochondrion, complete genome blastn 27749 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Mecistocirrus Mecistocirrus digitatus
8422805 8422805 PRJNA788929_P_NODE_50007_length_198_cov_6.992000_g49346_i0 PRJNA788929 50007 198 6.992 13.84416 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g49346 i0 100 0.141414141414141 28 0 14 0 171 198 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12249000 12249000 PRJNA788929_P_NODE_36630_length_255_cov_15.428571_g35969_i0 PRJNA788929 36630 255 15.428571 39.34285605 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g35969 i0 100 0.109803921568627 28 0 11 0 228 255 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12249186 12249186 PRJNA788929_P_NODE_49370_length_202_cov_8.604651_g48709_i0 PRJNA788929 49370 202 8.604651 17.38139502 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g48709 i0 100 0.138613861386139 28 0 14 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13968316 13968316 PRJNA788929_P_NODE_46791_length_219_cov_4.095890_g46130_i0 PRJNA788929 46791 219 4.09589 8.9699991 Metazoa 33208 Nematoda Nematoda 340 3.69e-89   NTclustered gi|1174020828|gb|KY887583.1| 6293 g46130 i0 100 84.027397260274 184 0 84 0 22 205 1530 1713 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 18402 340 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
14798232 14798232 PRJNA788929_P_NODE_46392_length_221_cov_8.439189_g45731_i0 PRJNA788929 46392 221 8.439189 18.65060769 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g45731 i0 100 0.126696832579186 28 0 13 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
24995947 24995947 PRJNA788929_P_NODE_34980_length_263_cov_1.857895_g34319_i0 PRJNA788929 34980 263 1.857895 4.88626385 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g34319 i0 100 0.106463878326996 28 0 11 0 236 263 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;