RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA788929 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16072123 16072123 PRJNA788929_P_NODE_48033_length_210_cov_12.000000_g47372_i0 PRJNA788929 48033 210 12 25.2 Minisyncoccota bacterium 2053589 Bacteria Bacteria 152 1.77e-32   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g47372 i0 82.011 190.033333333333 189 25 87 7 5 187 444594 444779 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 39907 152 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;