RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA788929 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5042486 5042486 PRJNA788929_P_NODE_26504_length_309_cov_21.423729_g25843_i0 PRJNA788929 26504 309 21.423729 66.19932261 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 95.3 4.73e-15   NTclustered gi|998623043|dbj|LC049322.1| 51039 g25843 i0 92.424 16.5728155339806 66 5 21 0 129 194 3045 2980 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 5121 95.3 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei
16517189 16517189 PRJNA788929_P_NODE_33433_length_270_cov_12.309645_g32772_i0 PRJNA788929 33433 270 12.309645 33.2360415 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 115 3.11e-21   NTclustered gi|998623043|dbj|LC049322.1| 51039 g32772 i0 98.462 19.4851851851852 65 1 24 0 115 179 2979 3043 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 5261 115 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei
22446386 22446386 PRJNA788929_P_NODE_12538_length_488_cov_28.915663_g11881_i0 PRJNA788929 12538 488 28.915663 141.10843544 Globorotalia inflata 69028 SAR_Eukaryotes SAR_Eukaryotes 387 1.15e-102   NTclustered gi|998623040|dbj|LC049319.1| 69028 g11881 i0 84.962 48.8852459016393 399 40 79 14 24 408 1317 1709 Globorotalia inflata gene for 28S rRNA, partial sequence, isolate: 11-9-T65 blastn 23856 387 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Globorotalia Globorotalia inflata
25440986 25440986 PRJNA788929_P_NODE_30180_length_287_cov_7.934579_g29519_i0 PRJNA788929 30180 287 7.934579 22.77224173 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 119 2.58e-22   NTclustered gi|998623043|dbj|LC049322.1| 51039 g29519 i0 98.507 18.4494773519164 67 1 23 0 111 177 3045 2979 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 5295 119 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;