RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA788929 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
769171 769171 PRJNA788929_P_NODE_19941_length_366_cov_14.406143_g19281_i0 PRJNA788929 19941 366 14.406143 52.72648338 uncultured Vannellidae 544561 Discosea other_Eukaryota 427 4.94e-115   NTclustered gi|724028231|gb|KP099890.1| 544561 g19281 i0 89.143 84.9781420765027 350 28 94 9 1 343 860 514 Uncultured Vannellidae clone b17 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 31102 427 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
1214321 1214321 PRJNA788929_P_NODE_43901_length_234_cov_17.726708_g43240_i0 PRJNA788929 43901 234 17.726708 41.48049672 root 1 Root_unresolved Root_unresolved 390 3.909999999999999e-104   NTclustered gi|909719646|gb|KT185626.1| 5755 g43240 i0 100 54.7777777777778 211 0 90 0 24 234 3755 3965 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12818 390 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2045654 2045654 PRJNA788929_P_NODE_7202_length_701_cov_596.738854_g6568_i0 PRJNA788929 7202 701 596.738854 4183.13936654 Cochliopodium minus 313997 Discosea other_Eukaryota 1016 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g6568 i0 95.49 46.0356633380884 643 18 91 10 1 640 638 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 32271 1016 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
2489581 2489581 PRJNA788929_P_NODE_12602_length_487_cov_13.500000_g11945_i0 PRJNA788929 12602 487 13.5 65.745 Vannella 95228 Discosea other_Eukaryota 846 0   NTclustered gi|319659363|gb|GU320600.1| 943213 g11945 i0 99.151 94.7207392197125 471 3 97 1 1 470 472 2 Vannella sp. COHH 72 18S ribosomal RNA gene, partial sequence blastn 46129 846 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. COHH 72
4597395 4597395 PRJNA788929_P_NODE_16804_length_406_cov_123.828829_g16145_i0 PRJNA788929 16804 406 123.828829 502.74504574 Vannella septentrionalis 197531 Discosea other_Eukaryota 669 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g16145 i0 98.172 45.7955665024631 383 7 94 0 1 383 3157 2775 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18593 669 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
7147551 7147551 PRJNA788929_P_NODE_10626_length_544_cov_23.352442_g9973_i0 PRJNA788929 10626 544 23.352442 127.03728448 Cochliopodium minus 313997 Discosea other_Eukaryota 654 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g9973 i0 91.322 50.9963235294118 484 34 89 7 1 483 480 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 27742 654 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
8867248 8867248 PRJNA788929_P_NODE_14447_length_446_cov_1.697051_g13788_i0 PRJNA788929 14447 446 1.697051 7.56884746 Ripella 1217112 Discosea other_Eukaryota 780 0   NTclustered gi|1269228349|gb|MF683474.1| 2047821 g13788 i0 98.214 100.495515695067 448 4 100 4 1 446 1152 707 Ripella platypodia clone 23.4.22 18S ribosomal RNA gene, partial sequence blastn 44821 785 0.993630573248408 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
12248932 12248932 PRJNA788929_P_NODE_3250_length_1153_cov_68.561111_g2843_i0 PRJNA788929 3250 1153 68.561111 790.50960983 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 1629 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g2843 i0 93.525 62.5724197745013 1112 44 95 21 59 1153 4 1104 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 72146 1629 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
13523001 13523001 PRJNA788929_P_NODE_23071_length_336_cov_21.874525_g22410_i0 PRJNA788929 23071 336 21.874525 73.498404 Ripella sp. GP2 1217115 Discosea other_Eukaryota 516 9.35e-142   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g22410 i0 96.795 93.2410714285714 312 4 92 4 1 309 550 242 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 31329 516 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
17347490 17347490 PRJNA788929_P_NODE_2134_length_1439_cov_182.849195_g1742_i1 PRJNA788929 2134 1439 182.849195 2631.19991605 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 1483 0   NTclustered gi|330902848|gb|JF298251.1| 703021 g1742 i1 85.571 53.7261987491313 1497 125 100 66 1 1439 614 2077 Cochliopodium actinophorum clone 1203 18S ribosomal RNA gene, partial sequence blastn 77312 1483 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
19896241 19896241 PRJNA788929_P_NODE_33736_length_269_cov_2.193878_g33075_i0 PRJNA788929 33736 269 2.193878 5.90153182 Planopodium desertum 2773111 Discosea other_Eukaryota 446 9.669999999999997e-121   NTclustered gi|330902849|gb|JF298243.1| 2773111 g33075 i0 99.19 46.6765799256506 247 2 92 0 23 269 733 979 Ovalopodium desertum clone 3701 18S ribosomal RNA gene, partial sequence blastn 12556 446 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium desertum
22446511 22446511 PRJNA788929_P_NODE_1998_length_1487_cov_172.397454_g1742_i0 PRJNA788929 1998 1487 172.397454 2563.55014098 Cochliopodium minus 313997 Discosea other_Eukaryota 2054 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g1742 i0 91.732 50.9583053127102 1524 51 100 51 1 1487 655 2140 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 75775 2054 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
25441068 25441068 PRJNA788929_P_NODE_40480_length_245_cov_4.796512_g39819_i0 PRJNA788929 40480 245 4.796512 11.7514544 Cochliopodium 313557 Discosea other_Eukaryota 313 9.19e-81   NTclustered gi|59876024|gb|AY785057.1| 313998 g39819 i0 89.879 16.6489795918367 247 19 99 4 1 244 21 264 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 4079 313 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;