RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
769103 769103 PRJNA788929_P_NODE_16001_length_418_cov_21.715942_g15342_i0 PRJNA788929 16001 418 21.715942 90.77263756 Polychytrium aggregatum 110093 Fungi Fungi 148 4.989999999999999e-31   NTclustered gi|2432137896|ref|XM_053110084.1| 110093 g15342 i0 82.022 5.55023923444976 178 29 42 3 187 362 208 32 Polychytrium aggregatum 40S ribosomal protein S29-like protein (BJ171DRAFT_495104), mRNA blastn 2320 148 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
6318358 6318358 PRJNA788929_P_NODE_37365_length_252_cov_17.229050_g36704_i0 PRJNA788929 37365 252 17.22905 43.417206 Fimicolochytrium 1396492 Fungi Fungi 396 9.159999999999997e-106   NTclustered gi|1866582580|gb|MT730755.1| 1396494 g36704 i0 100 84.3888888888889 214 0 85 0 24 237 4304 4091 Fimicolochytrium alabamae isolate JEL0588 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21266 396 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium alabamae
17347355 17347355 PRJNA788929_P_NODE_13174_length_473_cov_29.030000_g12517_i0 PRJNA788929 13174 473 29.03 137.3119 Endochytrium sp. JEL 324 281852 Fungi Fungi 204 1.2e-47   NTclustered gi|82398552|gb|DQ273816.1| 281852 g12517 i0 96.748 57.7737843551797 123 3 54 1 335 457 2077 1956 Endochytrium sp. JEL324 isolate AFTOL-ID 631 28S ribosomal RNA gene, partial sequence blastn 27327 204 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Endochytriaceae Endochytrium Endochytrium sp. JEL 324
21171833 21171833 PRJNA788929_P_NODE_26557_length_309_cov_9.203390_g25896_i0 PRJNA788929 26557 309 9.20339 28.4384751 Polychytrium aggregatum 110093 Fungi Fungi 169 2.75e-37   NTclustered gi|2432169762|ref|XM_053112442.1| 110093 g25896 i0 85.987 31.462783171521 157 22 51 0 105 261 233 77 Polychytrium aggregatum 60S ribosomal protein L39 (BJ171DRAFT_520507), mRNA blastn 9722 169 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22891798 22891798 PRJNA788929_P_NODE_13938_length_456_cov_11.044386_g13280_i0 PRJNA788929 13938 456 11.044386 50.36240016 Opisthokonta 33154 Fungi Fungi 195 6.94e-45   NTclustered gi|82398309|gb|DQ273787.1| 64517 g13280 i0 94.488 30.6995614035088 127 6 28 1 321 447 2154 2279 Rhizophlyctis rosea isolate AFTOL-ID 43 28S ribosomal RNA gene, partial sequence blastn 13999 196 0.994897959183674 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;