RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4597824 4597824 PRJNA788929_P_NODE_43724_length_235_cov_20.777778_g43063_i0 PRJNA788929 43724 235 20.777778 48.8277783 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 268 1.92e-67   NTclustered gi|2874253688|emb|OY969414.1| 174324 g43063 i0 89.72 115.493617021277 214 17 90 5 24 235 2364439 2364229 MAG: uncultured Chlamydiales bacterium isolate MFD04463.bin.c.14 genome assembly, chromosome: 1 blastn 27141 268 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
10973611 10973611 PRJNA788929_P_NODE_44749_length_230_cov_8.528662_g44088_i0 PRJNA788929 44749 230 8.528662 19.6159226 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 381 2.309999999999999e-101   NTclustered gi|971146634|emb|LN879502.1| 389348 g44088 i0 99.061 107 213 1 92 1 1 212 1250962 1250750 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 24610 381 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
16072121 16072121 PRJNA788929_P_NODE_47713_length_212_cov_19.208633_g47052_i0 PRJNA788929 47713 212 19.208633 40.72230196 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 311 2.79e-80   NTclustered gi|971146634|emb|LN879502.1| 389348 g47052 i0 96.316 59.5283018867925 190 6 89 1 1 189 1249297 1249108 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 12620 311 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;