RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Balneolota"

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tax_superkingdom 1

tax_phylum 1

  • Balneolota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2045170 2045170 PRJNA788929_P_NODE_22642_length_340_cov_32.164794_g21981_i0 PRJNA788929 22642 340 32.164794 109.3602996 Gracilimonas sediminicola 2952158 Bacteria Bacteria 254 8.2e-63   NTclustered gi|2870278968|gb|CP175953.1| 2952158 g21981 i0 82.828 87.4470588235294 297 38 86 11 27 318 435 723 MAG: Gracilimonas sediminicola isolate MAG3 chromosome, complete genome blastn 29732 254 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Gracilimonas Gracilimonas sediminicola
3320314 3320314 PRJNA788929_P_NODE_11543_length_515_cov_34.947964_g10889_i0 PRJNA788929 11543 515 34.947964 179.9820146 Gracilimonas sediminicola 2952158 Bacteria Bacteria 363 2.05e-95   NTclustered gi|2870278968|gb|CP175953.1| 2952158 g10889 i0 80.4 234.277669902913 500 78 95 17 25 515 2061 1573 MAG: Gracilimonas sediminicola isolate MAG3 chromosome, complete genome blastn 120653 363 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Gracilimonas Gracilimonas sediminicola
17347532 17347532 PRJNA788929_P_NODE_23834_length_329_cov_25.738281_g23173_i0 PRJNA788929 23834 329 25.738281 84.67894449 Balneolaceae bacterium 2053516 Bacteria Bacteria 285 2.8e-72   NTclustered gi|1702192188|gb|CP030887.1| 2053516 g23173 i0 84.262 360.413373860182 305 34 92 7 27 329 1469450 1469742 MAG: Balneolaceae bacterium isolate ECT2AJA-110-D chromosome blastn 118576 285 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae   Balneolaceae bacterium
18620989 18620989 PRJNA788929_P_NODE_38995_length_248_cov_12.834286_g38334_i0 PRJNA788929 38995 248 12.834286 31.82902928 Balneolaceae bacterium 2053516 Bacteria Bacteria 196 9.79e-46   NTclustered gi|2021937725|gb|CP051242.1| 2053516 g38334 i0 83.333 38.375 216 32 87 3 1 216 1274433 1274222 MAG: Balneolaceae bacterium isolate ih13 chromosome blastn 9517 196 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae   Balneolaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;