RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA788929 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6318275 6318275 PRJNA788929_P_NODE_2885_length_1231_cov_33.795337_g2512_i0 PRJNA788929 2885 1231 33.795337 416.02059847 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 60.2 7.51e-4   NTclustered gi|820702250|tpe|LN714502.1| 432359 g2512 i0 94.872 0.9821283509342 39 0 3 2 480 517 4867993 4868030 TPA_asm: Toxoplasma gondii VEG, chromosome chrXII, complete genome blastn 1209 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
23721965 23721965 PRJNA788929_P_NODE_16739_length_407_cov_29.446108_g16080_i0 PRJNA788929 16739 407 29.446108 119.84565956 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 191 7.93e-44   NTclustered gi|1620140690|ref|XM_028676122.1| 85471 g16080 i0 80.078 19.4496314496315 256 51 63 0 127 382 1321 1066 Plasmodium relictum tubulin beta chain, putative (PRELSG_0806400), partial mRNA blastn 7916 191 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;