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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA788929" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA788929 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2045088 2045088 PRJNA788929_P_NODE_17962_length_390_cov_9.921136_g17302_i0 PRJNA788929 17962 390 9.921136 38.6924304 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.01   NTclustered gi|2082264539|ref|XM_043069919.1| 3055 g17302 i0 100 0.720512820512821 29 0 7 0 127 155 6137 6165 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_14g608150v5), mRNA blastn 281 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3320323 3320323 PRJNA788929_P_NODE_11743_length_509_cov_38.470183_g11088_i0 PRJNA788929 11743 509 38.470183 195.81323147 Yamagishiella unicocca 51707 Plants Plants 69.4 4.95e-7   NTclustered gi|1808707058|gb|MH511786.1| 51707 g11088 i0 79.817 1.1335952848723 109 11 21 9 227 332 3440 3540 Yamagishiella unicocca clone NODE_1113 photosystem II protein VI (psbF) and photosystem II protein L (psbL) genes, complete cds; plastid blastn 577 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Yamagishiella Yamagishiella unicocca
4597642 4597642 PRJNA788929_P_NODE_32564_length_274_cov_14.149254_g31903_i0 PRJNA788929 32564 274 14.149254000000001 38.76895596 Pseudendoclonium arthopyreniae 926286 Plants Plants 414 2.7899999999999998e-111   NTclustered gi|312165803|gb|HM068616.1| 926286 g31903 i0 96.414 9.5 251 9 92 0 1 251 431 181 Pseudendoclonium arthopyreniae strain SAG 467-2 23S ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 2603 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Kornmanniaceae Pseudendoclonium Pseudendoclonium arthopyreniae
7147902 7147902 PRJNA788929_P_NODE_34426_length_265_cov_31.135417_g33765_i0 PRJNA788929 34426 265 31.135417 82.50885505 Prototheca wickerhamii 3111 Plants Plants 449 7.35e-122   NTclustered gi|1929550831|gb|MN794237.1| 3111 g33765 i0 100 15.5584905660377 243 0 92 0 23 265 26 268 Prototheca wickerhamii strain DBVPG mitochondrion, complete genome blastn 4123 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
8422409 8422409 PRJNA788929_P_NODE_22967_length_337_cov_19.299242_g22306_i0 PRJNA788929 22967 337 19.299242 65.03844554 Lobosphaera incisa 312850 Plants Plants 95.3 5.21e-15   NTclustered gi|821316988|ref|NC_027060.1| 312850 g22306 i0 85.106 26.1810089020772 94 12 27 2 141 232 18722 18629 Lobosphaera incisa strain SAG 2468 mitochondrion, complete genome blastn 8823 95.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
9697529 9697529 PRJNA788929_P_NODE_21048_length_355_cov_26.450355_g20388_i0 PRJNA788929 21048 355 26.450355 93.89876025 Chlamydomonas sp. 2812568 Plants Plants 193 1.9e-44   NTclustered gi|2862228870|gb|PQ645504.1| 2812568 g20388 i0 78.209 61.6985915492958 335 50 91 17 10 332 4992 4669 Chlamydomonas sp. isolate AGSB0357 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21903 193 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp.
9697942 9697942 PRJNA788929_P_NODE_48748_length_206_cov_8.789474_g48087_i0 PRJNA788929 48748 206 8.789474 18.10631644 Desmochloris halophila 138176 Plants Plants 364 2.0399999999999993e-96   NTclustered gi|371782086|emb|HE610118.1| 138176 g48087 i0 98.544 100.315533980583 206 3 100 0 1 206 2808 2603 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 20665 364 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
13523069 13523069 PRJNA788929_P_NODE_27311_length_304_cov_9.419913_g26650_i0 PRJNA788929 27311 304 9.419913 28.63653552 Koliella sp. HS-2024a 3231931 Plants Plants 91.6 6e-14   NTclustered gi|2754686564|gb|PP990794.1| 3231931 g26650 i0 78.986 1.875 138 25 45 4 1 138 9483 9616 Koliella sp. HS-2024a strain FACHB-3607 mitochondrion, complete genome blastn 570 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella sp. HS-2024a
17347902 17347902 PRJNA788929_P_NODE_47494_length_214_cov_6.205674_g46833_i0 PRJNA788929 47494 214 6.205674 13.28014236 chlorobiont of Psora decipiens 1938899 Plants Plants 363 7.669999999999997e-96   NTclustered gi|1158556075|emb|LT717549.1| 1938899 g46833 i0 99.497 92.5560747663551 199 1 93 0 16 214 469 271 Chlorobiont of Psora decipiens partial 26S rRNA gene, isolate Ger1-Swe blastn 19807 363 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       chlorobiont of Psora decipiens
19896434 19896434 PRJNA788929_P_NODE_45956_length_224_cov_6.887417_g45295_i0 PRJNA788929 45956 224 6.887417 15.42781408 Ulothrix zonata 43941 Plants Plants 340 3.789999999999999e-89   NTclustered gi|530445654|emb|HE860533.1| 43941 g45295 i0 97.044 88.9955357142857 203 4 90 2 23 224 114 315 Ulothrix zonata partial 28S rRNA gene, isolate Q19 blastn 19935 340 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Ulothrix Ulothrix zonata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;