RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA785164" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA785164 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6317544 6317544 PRJNA785164_P_NODE_37705_length_294_cov_1.045249_g37240_i0 PRJNA785164 37705 294 1.045249 3.07303206 Trypanosoma 5690 Euglenozoa other_Eukaryota 246 1.1699999999999999e-60   NTclustered gi|61207301|gb|AY785691.1| 5693 g37240 i0 82.069 106.496598639456 290 50 98 2 1 289 1237 949 Trypanosoma cruzi strain Esmeraldo cl3 clone 1 elongation factor 1-alpha (EF-1alpha) gene, partial cds blastn 31310 246 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
17344913 17344913 PRJNA785164_P_NODE_57774_length_245_cov_0.895349_g57309_i0 PRJNA785164 57774 245 0.895349 2.19360505 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 128 3.57e-25   NTclustered gi|686647589|ref|XM_009317965.1| 71804 g57309 i0 84.733 62.2285714285714 131 16 53 4 116 244 79 207 Trypanosoma grayi phosphoenolpyruvate mutase partial mRNA blastn 15246 128 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
19893047 19893047 PRJNA785164_P_NODE_39836_length_285_cov_4.849057_g39371_i0 PRJNA785164 39836 285 4.849057 13.81981245 Neobodo designis 312471 Euglenozoa other_Eukaryota 468 2.21e-127   NTclustered gi|197723537|gb|EF681922.2| 312471 g39371 i0 96.797 152.20701754386 281 8 99 1 5 285 949 1228 Neobodo designis strain HFCC97 28S ribosomal RNA gene, partial sequence blastn 43379 468 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
23718579 23718579 PRJNA785164_P_NODE_18939_length_443_cov_3.305405_g18474_i0 PRJNA785164 18939 443 3.305405 14.64294415 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 619 9.369999999999998e-173   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g18474 i0 91.796 143.805869074492 451 28 100 7 1 443 4351 4800 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 63706 619 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;