RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA785164" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA785164 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6317508 6317508 PRJNA785164_P_NODE_27265_length_353_cov_0.892857_g26800_i0 PRJNA785164 27265 353 0.892857 3.15178521 Streptobacillus 34104 Bacteria Bacteria 361 4.879999999999999e-95   NTclustered gi|470485174|ref|NR_076688.1| 34105 g26800 i0 86.607 129.036827195467 336 34 93 11 20 349 5 335 Streptobacillus moniliformis strain DSM 12112 23S ribosomal RNA gene, complete sequence blastn 45550 361 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis
21615805 21615805 PRJNA785164_P_NODE_6037_length_985_cov_2.581140_g5671_i0 PRJNA785164 6037 985 2.58114 25.424229 Leptotrichia 32067 Bacteria Bacteria 1620 0   NTclustered gi|470484715|ref|NR_076664.1| 40542 g5671 i0 96.995 461.143147208122 965 28 98 1 1 964 1560 596 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 454226 1626 0.996309963099631 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;