RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA785164" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA785164 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2042292 2042292 PRJNA785164_P_NODE_48282_length_258_cov_2.967568_g47817_i0 PRJNA785164 48282 258 2.967568 7.65632544 Stentor roeselii 1703786 SAR_Eukaryotes SAR_Eukaryotes 424 4.32e-114   NTclustered gi|921061859|gb|KP970274.1| 1703786 g47817 i0 98.745 64.515503875969 239 2 92 1 21 258 64 302 Stentor roeselii isolate STR large subunit ribosomal RNA gene, partial sequence blastn 16645 424 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor roeselii
3317689 3317689 PRJNA785164_P_NODE_48263_length_258_cov_6.594595_g47798_i0 PRJNA785164 48263 258 6.594595 17.0140551 Mallomonas asmundiae 64709 SAR_Eukaryotes SAR_Eukaryotes 292 1.27e-74   NTclustered gi|16326554|gb|AF409122.1| 64709 g47798 i0 88.843 24.1627906976744 242 22 93 5 1 239 3689 3928 Mallomonas asmundae internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6234 292 1 Eukaryota Sar     Synurophyceae Synurales Mallomonadaceae Mallomonas Mallomonas asmundiae
8419316 8419316 PRJNA785164_P_NODE_40227_length_284_cov_1.530806_g39762_i0 PRJNA785164 40227 284 1.5308059999999999 4.34748904 Fragilaria famelica 1003135 SAR_Eukaryotes SAR_Eukaryotes 152 2.51e-32   NTclustered gi|2862228909|gb|PQ645543.1| 1003135 g39762 i0 77.032 43.1549295774648 283 53 99 8 1 282 3771 3500 Fragilaria famelica isolate AGSB0425 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12256 152 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria famelica
8866591 8866591 PRJNA785164_P_NODE_24867_length_373_cov_1.990000_g24402_i0 PRJNA785164 24867 373 1.99 7.4227 Poterioochromonas 88166 SAR_Eukaryotes SAR_Eukaryotes 601 2.8099999999999993e-167   NTclustered gi|323690576|gb|GU935635.1| 88167 g24402 i0 95.71 99.6005361930295 373 16 100 0 1 373 1199 1571 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 37151 601 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
12246026 12246026 PRJNA785164_P_NODE_49350_length_255_cov_2.538462_g48885_i0 PRJNA785164 49350 255 2.538462 6.4730781 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 342 1.2299999999999997e-89   NTclustered gi|323690576|gb|GU935635.1| 88167 g48885 i0 90.98 103.019607843137 255 21 100 2 1 255 2034 1782 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 26270 342 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
23719602 23719602 PRJNA785164_P_NODE_61079_length_242_cov_0.911243_g60614_i0 PRJNA785164 61079 242 0.911243 2.20520806 Chrysophyceae sp. I76 429461 SAR_Eukaryotes SAR_Eukaryotes 283 7.1e-72   NTclustered gi|134142272|gb|EF432474.1| 429461 g60614 i0 87.917 94.0289256198347 240 29 99 0 1 240 1125 886 Chrysophyceae sp. I76 clone E7 beta tubulin (btub) mRNA, partial cds blastn 22755 283 1 Eukaryota Sar     Chrysophyceae       Chrysophyceae sp. I76
24165220 24165220 PRJNA785164_P_NODE_62839_length_237_cov_5.591463_g62374_i0 PRJNA785164 62839 237 5.591463 13.25176731 Entomoneis 186042 SAR_Eukaryotes SAR_Eukaryotes 230 9.16e-56   NTclustered gi|2202538958|gb|OM891864.1| 216750 g62374 i0 86.603 9.79746835443038 209 26 88 2 13 220 4053 3846 Entomoneis cf. alata small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2322 230 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae   Entomoneidaceae Entomoneis Entomoneis cf. alata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;