RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA784979" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA784979 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17791040 17791040 PRJNA784979_S_NODE_11034_length_165_cov_1.974138_g10992_i0 PRJNA784979 11034 165 1.974138 3.2573277 Schlesneria 656899 Bacteria Bacteria 265 1.6299999999999998e-66   NTclustered gi|12583970|gb|AF245374.1|AF245374 149589 g10992 i0 96.835 110.018181818182 158 5 96 0 4 161 2151 2308 Planctomycete str. 639 23S ribosomal RNA gene, partial sequence blastn 18153 265 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 639
24992004 24992004 PRJNA784979_S_NODE_4280_length_228_cov_1.033520_g4238_i0 PRJNA784979 4280 228 1.03352 2.3564256 Frigoriglobus tundricola 2774151 Bacteria Bacteria 241 4.04e-59   NTclustered gi|1870286614|gb|CP053452.2| 2774151 g4238 i0 91.477 77.469298245614 176 14 77 1 9 184 4960647 4960473 Frigoriglobus tundricola strain PL17 chromosome, complete genome blastn 17663 241 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Frigoriglobus Frigoriglobus tundricola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;