RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA784979" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 6 ✖

bioproject 1

  • PRJNA784979 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3765105 3765105 PRJNA784979_S_NODE_5683_length_205_cov_2.147436_g5641_i0 PRJNA784979 5683 205 2.147436 4.4022438 Betaretrovirus 140052 Viruses Viruses 374 3.3599999999999997e-99   NTclustered gi|9627014|ref|NC_001514.1| 11856 g5641 i0 99.512 4 205 1 100 0 1 205 7652 7448 Squirrel monkey retrovirus - HLB, complete genome blastn 820 374 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
5041681 5041681 PRJNA784979_S_NODE_1904_length_340_cov_1.749141_g1862_i0 PRJNA784979 1904 340 1.749141 5.9470794 Betaretrovirus 140052 Viruses Viruses 623 5.429999999999999e-174   NTclustered gi|9627014|ref|NC_001514.1| 11856 g1862 i0 99.706 4 340 1 100 0 1 340 7134 7473 Squirrel monkey retrovirus - HLB, complete genome blastn 1360 623 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
7144039 7144039 PRJNA784979_S_NODE_6086_length_200_cov_2.026490_g6044_i0 PRJNA784979 6086 200 2.02649 4.05298 Betaretrovirus squmon 3427297 Viruses Viruses 370 4.22e-98   NTclustered gi|1666023499|gb|MK561030.1| 11856 g6044 i0 100 4.285 200 0 100 0 1 200 8154 8353 Squirrel monkey retrovirus, complete genome blastn 857 370 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
10142004 10142004 PRJNA784979_S_NODE_7268_length_188_cov_1.834532_g7226_i0 PRJNA784979 7268 188 1.834532 3.44892016 Betaretrovirus 140052 Viruses Viruses 348 1.84e-91   NTclustered gi|9627014|ref|NC_001514.1| 11856 g7226 i0 100 4 188 0 100 0 1 188 6690 6877 Squirrel monkey retrovirus - HLB, complete genome blastn 752 348 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
12693122 12693122 PRJNA784979_S_NODE_9510_length_171_cov_1.254098_g9468_i0 PRJNA784979 9510 171 1.254098 2.14450758 Betaretrovirus 140052 Viruses Viruses 305 9.96e-79   NTclustered gi|9627014|ref|NC_001514.1| 11856 g9468 i0 98.83 4.81286549707602 171 2 100 0 1 171 7839 7669 Squirrel monkey retrovirus - HLB, complete genome blastn 823 305 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
18617104 18617104 PRJNA784979_S_NODE_4255_length_228_cov_2.201117_g4213_i0 PRJNA784979 4255 228 2.201117 5.01854676 Betaretrovirus squmon 3427297 Viruses Viruses 422 1.34e-113   NTclustered gi|1666023499|gb|MK561030.1| 11856 g4213 i0 100 4 228 0 100 0 1 228 6661 6434 Squirrel monkey retrovirus, complete genome blastn 912 422 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;