RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA784298" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA784298 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
765288 765288 PRJNA784298_P_NODE_14361_length_329_cov_1.703125_g14160_i0 PRJNA784298 14361 329 1.703125 5.60328125 Prosthecobacter fusiformis 48464 Bacteria Bacteria 551 2.499999999999999e-152   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g14160 i0 96.951 271.109422492401 328 10 99 0 2 329 737 410 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 89195 551 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
10141926 10141926 PRJNA784298_P_NODE_8008_length_445_cov_1.870968_g7807_i0 PRJNA784298 8008 445 1.870968 8.3258076 Fontisphaera 3050007 Bacteria Bacteria 403 1.0299999999999996e-107   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g7807 i0 87.052 82.8179775280899 363 39 80 6 1 357 3990513 3990873 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 36854 403 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
24991818 24991818 PRJNA784298_P_NODE_24100_length_250_cov_0.870056_g23899_i0 PRJNA784298 24100 250 0.870056 2.17514 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 324 4.35e-84   NTclustered gi|2874253768|emb|OY969715.1| 412056 g23899 i0 90 98.896 250 25 100 0 1 250 914745 914994 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 24724 324 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;