RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA784298" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA784298 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13519036 13519036 PRJNA784298_P_NODE_13011_length_346_cov_1.633700_g12810_i0 PRJNA784298 13011 346 1.6337 5.652602 Spirochaetota bacterium 2202144 Bacteria Bacteria 130 1.47e-25   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g12810 i0 81.646 5.94219653179191 158 27 45 2 1 157 74529 74373 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 2056 130 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
18616884 18616884 PRJNA784298_P_NODE_19475_length_280_cov_1.487923_g19274_i0 PRJNA784298 19475 280 1.487923 4.1661844 Brachyspira murdochii 84378 Bacteria Bacteria 54.7 0.007   NTclustered gi|296016874|gb|CP001959.1| 526224 g19274 i0 100 0.103571428571429 29 0 10 0 50 78 1024117 1024089 Brachyspira murdochii DSM 12563, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira murdochii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;