RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA784298" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA784298 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1213177 1213177 PRJNA784298_P_NODE_21561_length_264_cov_4.151832_g21360_i0 PRJNA784298 21561 264 4.151832 10.96083648 Leishmania 5658 Euglenozoa other_Eukaryota 339 1.65e-88   NTclustered gi|2593250474|emb|OY748421.1| 5660 g21360 i0 89.744 132.435606060606 273 16 100 9 1 264 990123 989854 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 34963 339 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
8866393 8866393 PRJNA784298_P_NODE_25927_length_244_cov_0.900585_g25726_i0 PRJNA784298 25927 244 0.900585 2.1974274 Trypanosoma 5690 Euglenozoa other_Eukaryota 392 1.14e-104   NTclustered gi|71745557|ref|XM_822316.1| 185431 g25726 i0 100 4.58196721311475 212 0 87 0 33 244 1 212 Trypanosoma brucei brucei TREU927 60S ribosomal protein L27a (Tb09.v1.0640), partial mRNA blastn 1118 392 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
21167823 21167823 PRJNA784298_P_NODE_15697_length_313_cov_130.500000_g15496_i0 PRJNA784298 15697 313 130.5 408.465 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 320 7.27e-83   NTclustered gi|1031970223|gb|CP015657.1| 85057 g15496 i0 85.304 110.121405750799 313 42 99 4 1 312 467881 467572 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI7, partial sequence blastn 34468 320 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;