RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA784298" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA784298 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7591327 7591327 PRJNA784298_P_NODE_24626_length_248_cov_0.880000_g24425_i0 PRJNA784298 24626 248 0.88 2.1824 Streptobacillus 34104 Bacteria Bacteria 248 2.67e-61   NTclustered gi|1356701568|gb|CP027400.1| 34105 g24425 i0 85.593 2.85483870967742 236 34 95 0 13 248 1071381 1071146 Streptobacillus moniliformis strain FDAARGOS_310 chromosome, complete genome blastn 708 248 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis
8418389 8418389 PRJNA784298_P_NODE_15867_length_312_cov_1.414226_g15666_i0 PRJNA784298 15867 312 1.414226 4.41238512 Fusobacterium hominis 2764326 Bacteria Bacteria 536 6.61e-148   NTclustered gi|1897733338|gb|CP060637.1| 2764326 g15666 i0 97.749 517.910256410256 311 7 99 0 2 312 782518 782828 Fusobacterium hominis strain NSJ-57 chromosome, complete genome blastn 161588 536 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hominis
12244842 12244842 PRJNA784298_P_NODE_12950_length_347_cov_1.124088_g12749_i0 PRJNA784298 12950 347 1.124088 3.90058536 uncultured Ilyobacter sp. 544433 Bacteria Bacteria 56.5 0.003   NTclustered gi|2814788370|emb|OY764863.2| 544433 g12749 i0 97.059 0.0979827089337176 34 0 10 1 275 308 495002 494970 MAG: uncultured Ilyobacter sp. isolate 4b14623d-3041-4bcb-9ca5-1f7150ffa235 genome assembly, chromosome: 1 blastn 34 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter uncultured Ilyobacter sp.
12692975 12692975 PRJNA784298_P_NODE_28510_length_205_cov_8.143939_g28309_i0 PRJNA784298 28510 205 8.143939 16.69507495 Cetobacterium 180162 Bacteria Bacteria 379 7.229999999999999e-101   NTclustered gi|2865368125|gb|CP122294.1| 188913 g28309 i0 100 519.458536585366 205 0 100 0 1 205 280360 280156 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 106489 379 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;