RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA782551" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA782551 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3314877 3314877 PRJNA782551_P_NODE_13103_length_270_cov_1.365482_g12981_i0 PRJNA782551 13103 270 1.365482 3.6868014 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 248 2.94e-61   NTclustered gi|2874253885|emb|OY970060.1| 171953 g12981 i0 83.908 6.99259259259259 261 40 96 2 3 262 3054976 3055235 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 1888 248 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
13517436 13517436 PRJNA782551_P_NODE_17671_length_249_cov_0.875000_g17549_i0 PRJNA782551 17671 249 0.875 2.17875 uncultured Vicinamibacterales bacterium 3036250 Bacteria Bacteria 54.7 0.006   NTclustered gi|2546137835|emb|OY282382.1| 3036250 g17549 i0 96.97 0.132530120481928 33 0 13 1 203 234 903674 903706 MAG: uncultured Vicinamibacterales bacterium isolate e65da963-7c29-4b68-91ce-224fd25ea74c genome assembly, chromosome: 1 blastn 33 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     uncultured Vicinamibacterales bacterium
17790208 17790208 PRJNA782551_P_NODE_19614_length_247_cov_0.885057_g19492_i0 PRJNA782551 19614 247 0.885057 2.18609079 Candidatus Solibacter 332162 Bacteria Bacteria 385 1.94e-102   NTclustered gi|76574290|gb|DQ139438.1| 171953 g19492 i0 94.758 101.97975708502 248 11 100 2 1 247 779 533 Uncultured Acidobacteria bacterium clone CAL10 23S ribosomal RNA gene, partial sequence blastn 25189 385 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;