RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA782551" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA782551 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9692022 9692022 PRJNA782551_P_NODE_14268_length_261_cov_1.414894_g14146_i0 PRJNA782551 14268 261 1.414894 3.69287334 Opitutus sp. GAS368 1882749 Bacteria Bacteria 364 2.689999999999999e-96   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g14146 i0 91.923 8.71264367816092 260 21 99 0 1 260 73840 74099 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 2274 364 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
13517412 13517412 PRJNA782551_P_NODE_15711_length_251_cov_0.865169_g15589_i0 PRJNA782551 15711 251 0.865169 2.17157419 Luteolibacter sp. 1962973 Bacteria Bacteria 381 2.549999999999999e-101   NTclustered gi|2836248208|gb|CP121322.1| 1962973 g15589 i0 94.024 32.1195219123506 251 15 100 0 1 251 1010270 1010020 MAG: Luteolibacter sp. isolate NCC532_bact_1514 chromosome, complete genome blastn 8062 381 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
18615280 18615280 PRJNA782551_P_NODE_20435_length_246_cov_0.890173_g20313_i0 PRJNA782551 20435 246 0.890173 2.18982558 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 200 7.5e-47   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g20313 i0 81.481 0.98780487804878 243 45 99 0 2 244 4830292 4830534 Luteolibacter sp. SL250 chromosome blastn 243 200 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
19890453 19890453 PRJNA782551_P_NODE_16196_length_251_cov_0.865169_g16074_i0 PRJNA782551 16196 251 0.865169 2.17157419 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 381 2.549999999999999e-101   NTclustered gi|2874254065|emb|OY970130.1| 412056 g16074 i0 94.024 86.8326693227092 251 15 100 0 1 251 5153322 5153572 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 21795 381 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
21166255 21166255 PRJNA782551_P_NODE_18697_length_248_cov_0.880000_g18575_i0 PRJNA782551 18697 248 0.88 2.1824 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 204 5.849999999999999e-48   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g18575 i0 84.259 8.85483870967742 216 26 85 8 1 210 7050688 7050475 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 2196 204 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;