RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA782551" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA782551 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6316577 6316577 PRJNA782551_P_NODE_545_length_1214_cov_5.054338_g197_i1 PRJNA782551 545 1214 5.054338 61.35966332 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 276 6.749999999999998e-69   NTclustered gi|49356809|gb|AY605213.1| 282480 g197 i1 86.561 14.2429983525535 253 30 21 3 870 1121 905 656 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 17291 276 1 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea
12243153 12243153 PRJNA782551_P_NODE_1070_length_917_cov_8.644550_g968_i0 PRJNA782551 1070 917 8.64455 79.2705235 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 891 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g968 i0 94.783 42.1363140676118 575 24 62 4 2 571 574 1 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 38639 891 1 Eukaryota Amoebozoa             uncultured Amoebozoa
12243217 12243217 PRJNA782551_P_NODE_15690_length_251_cov_0.865169_g15568_i0 PRJNA782551 15690 251 0.865169 2.17157419 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 398 2.5399999999999994e-106   NTclustered gi|259595677|gb|FJ705341.1| 675832 g15568 i0 95.238 25.4860557768924 252 11 100 1 1 251 1835 2086 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 6397 398 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
21166290 21166290 PRJNA782551_P_NODE_2157_length_665_cov_10.300676_g2041_i0 PRJNA782551 2157 665 10.300676 68.4994954 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 732 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g2041 i0 89.58 53.7804511278195 595 36 89 16 75 664 1 574 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 35764 732 1 Eukaryota Amoebozoa             uncultured Amoebozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;