contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA782235" and tax_phylum = "Myxococcota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 763272 | 763272 | PRJNA782235_P_NODE_17181_length_250_cov_1.802260_g16992_i0 | PRJNA782235 | 17181 | 250 | 1.80226 | 4.50565 | Cystobacter fuscus | 43 | Bacteria | Bacteria | 444 | 3.1999999999999986e-120 | NTclustered | gi|2579665545|gb|CP043492.1| | 43 | g16992 | i0 | 98.795 | 299.48 | 249 | 3 | 99 | 0 | 1 | 249 | 4450522 | 4450770 | Cystobacter fuscus strain Cbf 8 chromosome, complete genome | blastn | 74870 | 444 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Cystobacter | Cystobacter fuscus | ||
| 4591622 | 4591622 | PRJNA782235_P_NODE_19824_length_248_cov_0.880000_g19635_i0 | PRJNA782235 | 19824 | 248 | 0.88 | 2.1824 | Archangium gephyra | 48 | Bacteria | Bacteria | 169 | 2.13e-37 | NTclustered | gi|2809295724|gb|CP102578.1| | 48 | g19635 | i0 | 85.366 | 62.7822580645161 | 164 | 22 | 66 | 2 | 71 | 233 | 854457 | 854295 | Archangium gephyra strain SDU49 chromosome, complete genome | blastn | 15570 | 169 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium gephyra | ||
| 4591703 | 4591703 | PRJNA782235_P_NODE_24864_length_244_cov_0.900585_g24675_i0 | PRJNA782235 | 24864 | 244 | 0.900585 | 2.1974274 | Sorangium cellulosum | 56 | Bacteria | Bacteria | 106 | 1.67e-18 | NTclustered | gi|520999024|gb|CP003969.1| | 1254432 | g24675 | i0 | 82.645 | 1.72950819672131 | 121 | 19 | 49 | 2 | 26 | 145 | 12021022 | 12020903 | Sorangium cellulosum So0157-2, complete genome | blastn | 422 | 106 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 4591851 | 4591851 | PRJNA782235_P_NODE_9804_length_291_cov_1.077982_g9615_i0 | PRJNA782235 | 9804 | 291 | 1.077982 | 3.13692762 | Cystobacter fuscus | 43 | Bacteria | Bacteria | 479 | 1.0399999999999996e-130 | NTclustered | gi|2579665545|gb|CP043492.1| | 43 | g9615 | i0 | 96.54 | 227.034364261168 | 289 | 10 | 99 | 0 | 3 | 291 | 7643462 | 7643750 | Cystobacter fuscus strain Cbf 8 chromosome, complete genome | blastn | 66067 | 479 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Cystobacter | Cystobacter fuscus | ||
| 12242982 | 12242982 | PRJNA782235_P_NODE_24230_length_244_cov_1.280702_g24041_i0 | PRJNA782235 | 24230 | 244 | 1.280702 | 3.12491288 | Pyxidicoccus parkwayensis | 2813578 | Bacteria | Bacteria | 248 | 2.6199999999999997e-61 | NTclustered | gi|1998505907|gb|CP071090.1| | 2813578 | g24041 | i0 | 85.95 | 8.65163934426229 | 242 | 22 | 99 | 6 | 3 | 244 | 74225 | 74454 | Pyxidicoccus parkwaysis strain SCPEA02 chromosome | blastn | 2111 | 248 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Pyxidicoccus | Pyxidicoccus parkwayensis | ||
| 14791952 | 14791952 | PRJNA782235_P_NODE_21812_length_246_cov_1.780347_g21623_i0 | PRJNA782235 | 21812 | 246 | 1.780347 | 4.37965362 | Pyxidicoccus parkwayensis | 2813578 | Bacteria | Bacteria | 294 | 3.34e-75 | NTclustered | gi|1998505907|gb|CP071090.1| | 2813578 | g21623 | i0 | 88.211 | 28.3739837398374 | 246 | 29 | 100 | 0 | 1 | 246 | 5126427 | 5126672 | Pyxidicoccus parkwaysis strain SCPEA02 chromosome | blastn | 6980 | 294 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Pyxidicoccus | Pyxidicoccus parkwayensis | ||
| 14792014 | 14792014 | PRJNA782235_P_NODE_26612_length_242_cov_0.911243_g26423_i0 | PRJNA782235 | 26612 | 242 | 0.911243 | 2.20520806 | Pseudomyxococcus hansupus | 1297742 | Bacteria | Bacteria | 193 | 1.23e-44 | NTclustered | gi|891158403|gb|CP012109.1| | 1297742 | g26423 | i0 | 90.909 | 5.3099173553719 | 143 | 13 | 59 | 0 | 60 | 202 | 5692763 | 5692621 | Myxococcus hansupus strain mixupus chromosome, complete genome | blastn | 1285 | 193 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Pseudomyxococcus | Pseudomyxococcus hansupus | ||
| 17790056 | 17790056 | PRJNA782235_P_NODE_23654_length_245_cov_0.895349_g23465_i0 | PRJNA782235 | 23654 | 245 | 0.895349 | 2.19360505 | Nannocystis | 53 | Bacteria | Bacteria | 377 | 3.21e-100 | NTclustered | gi|2244669|emb|X87286.1| | 54 | g23465 | i0 | 95.378 | 157.94693877551 | 238 | 10 | 97 | 1 | 4 | 240 | 668 | 905 | N.exedens 23S rRNA gene | blastn | 38697 | 377 | 1 | Bacteria | Pseudomonadati | Myxococcota | Nannocystales | Nannocystaceae | Nannocystis | Nannocystis exedens | |||
| 21166104 | 21166104 | PRJNA782235_P_NODE_7837_length_322_cov_0.907631_g7648_i0 | PRJNA782235 | 7837 | 322 | 0.907631 | 2.92257182 | Pyxidicoccus parkwayensis | 2813578 | Bacteria | Bacteria | 579 | 1.1199999999999997e-160 | NTclustered | gi|1998505907|gb|CP071090.1| | 2813578 | g7648 | i0 | 99.068 | 299.124223602484 | 322 | 3 | 100 | 0 | 1 | 322 | 2161384 | 2161705 | Pyxidicoccus parkwaysis strain SCPEA02 chromosome | blastn | 96318 | 579 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Pyxidicoccus | Pyxidicoccus parkwayensis | ||
| 24989728 | 24989728 | PRJNA782235_P_NODE_14000_length_264_cov_1.554974_g13811_i0 | PRJNA782235 | 14000 | 264 | 1.554974 | 4.10513136 | Myxococcus stipitatus | 83455 | Bacteria | Bacteria | 183 | 8.2e-42 | NTclustered | gi|441484664|gb|CP004025.1| | 1278073 | g13811 | i0 | 79.389 | 1.96212121212121 | 262 | 52 | 99 | 2 | 1 | 261 | 3997782 | 3998042 | Myxococcus stipitatus DSM 14675, complete genome | blastn | 518 | 183 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus stipitatus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;