RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA782235" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA782235 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1212260 1212260 PRJNA782235_P_NODE_16361_length_251_cov_0.865169_g16172_i0 PRJNA782235 16361 251 0.865169 2.17157419 Campylobacter 194 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1721134175|emb|LR698977.1| 198 g16172 i0 100 254.003984063745 251 0 100 0 1 251 148879 149129 Campylobacter hyointestinalis isolate MGYG-HGUT-02307 genome assembly, chromosome: 1 blastn 63755 464 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis
5866908 5866908 PRJNA782235_P_NODE_26765_length_242_cov_0.911243_g26576_i0 PRJNA782235 26765 242 0.911243 2.20520806 Campylobacter showae 204 Bacteria Bacteria 425 1.11e-114   NTclustered gi|1622747600|gb|CP012544.1| 204 g26576 i0 98.347 2.28925619834711 242 4 100 0 1 242 1109813 1110054 Campylobacter showae strain ATCC 51146 chromosome, complete genome blastn 554 425 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
5866972 5866972 PRJNA782235_P_NODE_5485_length_375_cov_1.367550_g5296_i0 PRJNA782235 5485 375 1.36755 5.1283125 Campylobacter concisus 199 Bacteria Bacteria 671 0   NTclustered gi|1938730527|gb|CP049274.1| 199 g5296 i0 98.933 249.034666666667 375 4 100 0 1 375 1135908 1135534 Campylobacter concisus strain P10CDO-S2 chromosome, complete genome blastn 93388 671 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
16065785 16065785 PRJNA782235_P_NODE_21253_length_247_cov_0.885057_g21064_i0 PRJNA782235 21253 247 0.885057 2.18609079 Campylobacter rectus 203 Bacteria Bacteria 405 1.49e-108   NTclustered gi|1622745323|gb|CP012543.1| 203 g21064 i0 96.708 13.1538461538462 243 8 98 0 5 247 2375512 2375270 Campylobacter rectus strain ATCC 33238, complete genome blastn 3249 405 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
21165919 21165919 PRJNA782235_P_NODE_21137_length_247_cov_0.885057_g20948_i0 PRJNA782235 21137 247 0.885057 2.18609079 Campylobacter showae 204 Bacteria Bacteria 344 3.29e-90   NTclustered gi|1483583525|emb|LT631449.1| 204 g20948 i0 92.827 12.6437246963563 237 17 96 0 11 247 1886783 1886547 Campylobacter showae strain 129_VTPPs genome assembly, chromosome: I blastn 3123 344 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
21614601 21614601 PRJNA782235_P_NODE_6437_length_349_cov_1.115942_g6248_i0 PRJNA782235 6437 349 1.115942 3.89463758 root 1 Root_unresolved Root_unresolved 645 1.1899999999999993e-180   NTclustered gi|1226876681|gb|CP022559.1| 197 g6248 i0 100 100 349 0 100 0 1 349 699586 699934 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 34900 645 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
23716039 23716039 PRJNA782235_P_NODE_14339_length_262_cov_1.523810_g14150_i0 PRJNA782235 14339 262 1.52381 3.9923822 Arcobacter acticola 1849015 Bacteria Bacteria 477 3.329999999999999e-130   NTclustered gi|1845963640|gb|CP042652.1| 1849015 g14150 i0 99.617 370.381679389313 261 1 99 0 1 261 1064254 1063994 Arcobacter acticola strain KCTC 52212 chromosome, complete genome blastn 97040 477 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter acticola
25439207 25439207 PRJNA782235_P_NODE_7740_length_323_cov_1.820000_g7551_i0 PRJNA782235 7740 323 1.82 5.8786 Campylobacter 194 Bacteria Bacteria 597 3.11e-166   NTclustered gi|1935888393|gb|CP049239.1| 199 g7551 i0 100 228.417956656347 323 0 100 0 1 323 1032544 1032866 Campylobacter concisus strain P3UCO1 chromosome, complete genome blastn 73779 597 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;