RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA782235" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA782235 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13517187 13517187 PRJNA782235_P_NODE_24431_length_244_cov_0.900585_g24242_i0 PRJNA782235 24431 244 0.900585 2.1974274 Luteitalea pratensis 1855912 Bacteria Bacteria 272 1.55e-68   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g24242 i0 86.831 1.40573770491803 243 32 99 0 1 243 4715681 4715923 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 343 272 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
18614993 18614993 PRJNA782235_P_NODE_23315_length_245_cov_0.895349_g23126_i0 PRJNA782235 23315 245 0.895349 2.19360505 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 58.4 4.75e-4   NTclustered gi|2874253709|emb|OY969474.1| 171953 g23126 i0 97.059 0.26530612244898 34 1 14 0 86 119 5072884 5072851 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 65 58.4 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19890166 19890166 PRJNA782235_P_NODE_21416_length_247_cov_0.885057_g21227_i0 PRJNA782235 21416 247 0.885057 2.18609079 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 322 1.54e-83   NTclustered gi|217038899|gb|EU810989.1| 171953 g21227 i0 90.283 93.7732793522267 247 23 100 1 1 247 287 42 Uncultured Acidobacteria bacterium clone 01QD9 23S ribosomal RNA gene, partial sequence blastn 23162 322 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;