RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA782235" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA782235 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9691587 9691587 PRJNA782235_P_NODE_10408_length_287_cov_1.079439_g10219_i0 PRJNA782235 10408 287 1.079439 3.09798993 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 486 6.139999999999999e-133   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g10219 i0 97.213 8.52613240418119 287 8 100 0 1 287 3734 4020 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2447 486 1 Eukaryota Amoebozoa             Amoebozoa sp.
22440790 22440790 PRJNA782235_P_NODE_3578_length_473_cov_1.885000_g3390_i0 PRJNA782235 3578 473 1.885 8.91605 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 658 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g3390 i0 95.012 74.0211416490486 421 17 89 4 36 454 164 582 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 35012 658 1 Eukaryota Amoebozoa             uncultured Amoebozoa
22890033 22890033 PRJNA782235_P_NODE_3998_length_442_cov_1.094851_g3809_i0 PRJNA782235 3998 442 1.094851 4.83924142 Vermamoeba 1260114 Tubulinea other_Eukaryota 800 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g3809 i0 99.321 34.8574660633484 442 3 100 0 1 442 2903 2462 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15407 800 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;