RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA781453" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA781453 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14790836 14790836 PRJNA781453_P_NODE_16252_length_363_cov_1.593103_g16137_i0 PRJNA781453 16252 363 1.593103 5.78296389 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 305 2.39e-78   NTclustered gi|575456455|gb|CP007128.1| 861299 g16137 i0 83.486 2.48760330578512 327 54 90 0 9 335 34195 34521 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 903 305 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
22440424 22440424 PRJNA781453_P_NODE_6698_length_579_cov_1.521739_g6588_i0 PRJNA781453 6698 579 1.521739 8.81086881 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 865 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g6588 i0 93.654 124.597582037997 583 30 100 6 1 579 3043732 3043153 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 72142 865 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
22440525 22440525 PRJNA781453_P_NODE_9918_length_474_cov_2.057357_g9804_i0 PRJNA781453 9918 474 2.057357 9.75187218 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 532 1.35e-146   NTclustered gi|575456455|gb|CP007128.1| 861299 g9804 i0 87.029 108.784810126582 478 54 100 8 1 474 3043710 3044183 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 51564 532 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;