RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA781453" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 10 ✖

bioproject 1

  • PRJNA781453 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1212188 1212188 PRJNA781453_P_NODE_28781_length_268_cov_1.497436_g28666_i0 PRJNA781453 28781 268 1.497436 4.01312848 Carlavirus 12163 Viruses Viruses 468 2.06e-127   NTclustered gi|1081700958|gb|KU896946.1| 12169 g28666 i0 98.134 35.1865671641791 268 5 100 0 1 268 1871 1604 Potato virus S isolate HB7, complete genome blastn 9430 468 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
7141040 7141040 PRJNA781453_P_NODE_24946_length_291_cov_1.224771_g24831_i0 PRJNA781453 24946 291 1.224771 3.56408361 Carlavirus sigmasolani 3427796 Viruses Viruses 488 1.7299999999999995e-133   NTclustered gi|1825505916|gb|MT107560.1| 12169 g24831 i0 96.907 99.7731958762887 291 9 100 0 1 291 6781 7071 Potato virus S isolate X1-SD, complete genome blastn 29034 488 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
7141584 7141584 PRJNA781453_P_NODE_6486_length_588_cov_1.943689_g6376_i0 PRJNA781453 6486 588 1.943689 11.42889132 brine shrimp yue-like virus 3 2900455 Viruses Viruses 1086 0   NTclustered gi|2209095232|gb|OL472818.1| 2900455 g6376 i0 100 4.98639455782313 588 0 100 0 1 588 4476 3889 MAG: Brine shrimp yue-like virus 3 isolate SH/98 segment 1 RNA-dependent RNA polymerase gene, complete cds blastn 2932 1086 1 Viruses   Orthornavirae Negarnaviricota Yunchangviricetes Goujianvirales Yueviridae   brine shrimp yue-like virus 3
10966852 10966852 PRJNA781453_P_NODE_31029_length_256_cov_1.016393_g30914_i0 PRJNA781453 31029 256 1.016393 2.60196608 Potyvirus rapae 3240607 Viruses Viruses 457 4.22e-124   NTclustered gi|2019445938|dbj|LC537503.1| 12230 g30914 i0 98.828 100 256 3 100 0 1 256 8845 9100 Turnip mosaic virus CHN244 RNA, nearly complete sequence blastn 25600 457 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus rapae
12691914 12691914 PRJNA781453_P_NODE_38750_length_243_cov_0.905882_g38635_i0 PRJNA781453 38750 243 0.905882 2.20129326 Carlavirus 12163 Viruses Viruses 427 3.11e-115   NTclustered gi|1746543057|gb|MN095414.1| 12169 g38635 i0 98.354 97.7942386831276 243 4 100 0 1 243 4992 5234 Potato virus S isolate KZ.Ushkonyr, complete genome blastn 23764 427 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
13516061 13516061 PRJNA781453_P_NODE_15851_length_368_cov_1.037288_g15737_i0 PRJNA781453 15851 368 1.037288 3.81721984 Potyvirus rapae 3240607 Viruses Viruses 667 0   NTclustered gi|2019445986|dbj|LC537527.1| 12230 g15737 i0 99.455 99.7255434782609 367 2 99 0 2 368 7384 7750 Turnip mosaic virus CHZH34A RNA, nearly complete sequence blastn 36699 667 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus rapae
14791446 14791446 PRJNA781453_P_NODE_35132_length_248_cov_0.862857_g35017_i0 PRJNA781453 35132 248 0.862857 2.13988536 Potyvirus rapae 3240607 Viruses Viruses 420 5.34e-113   NTclustered gi|2019445942|dbj|LC537505.1| 12230 g35017 i0 97.177 100.008064516129 248 7 100 0 1 248 3048 2801 Turnip mosaic virus CHN254 RNA, nearly complete sequence blastn 24802 420 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus rapae
19889153 19889153 PRJNA781453_P_NODE_17076_length_354_cov_1.096085_g16961_i0 PRJNA781453 17076 354 1.096085 3.8801409 Carlavirus sigmasolani 3427796 Viruses Viruses 643 4.3399999999999985e-180   NTclustered gi|1825505916|gb|MT107560.1| 12169 g16961 i0 99.435 99.4124293785311 354 2 100 0 1 354 5934 6287 Potato virus S isolate X1-SD, complete genome blastn 35192 643 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
19889382 19889382 PRJNA781453_P_NODE_24656_length_293_cov_1.227273_g24541_i0 PRJNA781453 24656 293 1.227273 3.59590989 Carlavirus sigmasolani 3427796 Viruses Viruses 536 6.149999999999998e-148   NTclustered gi|1825505916|gb|MT107560.1| 12169 g24541 i0 99.659 99.8668941979522 293 1 100 0 1 293 7943 7651 Potato virus S isolate X1-SD, complete genome blastn 29261 536 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
24988649 24988649 PRJNA781453_P_NODE_12760_length_413_cov_1.358824_g12646_i0 PRJNA781453 12760 413 1.358824 5.61194312 Carlavirus sigmasolani 3427796 Viruses Viruses 741 0   NTclustered gi|1002341922|gb|KU058657.1| 12169 g12646 i0 99.031 57.041162227602896 413 4 100 0 1 413 8197 7785 Potato virus S isolate NZ-A ab030 Lincoln, complete genome blastn 23558 741 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;