RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA781427" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781427 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2487001 2487001 PRJNA781427_P_NODE_24922_length_475_cov_1.912935_g24043_i0 PRJNA781427 24922 475 1.912935 9.08644125 Lawsonia 41707 Bacteria Bacteria 706 0   NTclustered gi|2318587541|gb|CP107054.1| 29546 g24043 i0 93.474 239.408421052632 475 31 100 0 1 475 654919 655393 Lawsonia intracellularis strain PPE-GX01-2022 chromosome, complete genome blastn 113719 706 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis
11415401 11415401 PRJNA781427_P_NODE_22189_length_509_cov_3.137615_g21313_i0 PRJNA781427 22189 509 3.137615 15.97046035 Lawsonia 41707 Bacteria Bacteria 678 0   NTclustered gi|2318587541|gb|CP107054.1| 29546 g21313 i0 90.784 227.872298624754 510 43 100 4 1 509 655689 656195 Lawsonia intracellularis strain PPE-GX01-2022 chromosome, complete genome blastn 115987 678 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis
21614210 21614210 PRJNA781427_P_NODE_72937_length_253_cov_2.455556_g72053_i0 PRJNA781427 72937 253 2.455556 6.21255668 Lawsonia 41707 Bacteria Bacteria 381 2.5799999999999995e-101   NTclustered gi|2318587541|gb|CP107054.1| 29546 g72053 i0 93.75 112.786561264822 256 12 100 2 1 253 655399 655653 Lawsonia intracellularis strain PPE-GX01-2022 chromosome, complete genome blastn 28535 381 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;