RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA781427" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781427 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2037609 2037609 PRJNA781427_P_NODE_77802_length_250_cov_0.870056_g76918_i0 PRJNA781427 77802 250 0.870056 2.17514 Mycoplasmopsis arginini 2094 Bacteria Bacteria 54.7 0.006   NTclustered gi|2785563086|gb|CP165990.1| 2094 g76918 i0 96.97 0.132 33 0 13 1 93 125 601027 600996 Mycoplasmopsis arginini strain LGL1 chromosome, complete genome blastn 33 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
10964802 10964802 PRJNA781427_P_NODE_42969_length_347_cov_1.178832_g42087_i0 PRJNA781427 42969 347 1.178832 4.09054704 Malacoplasma microti 38746 Bacteria Bacteria 390 6.13e-104   NTclustered gi|299851939|gb|HM135466.1| 38746 g42087 i0 87.179 146.533141210375 351 36 100 7 1 347 1573 1228 Mycoplasma microti strain IL371 23S ribosomal RNA gene, partial sequence blastn 50847 390 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma microti
22437454 22437454 PRJNA781427_P_NODE_22238_length_509_cov_1.256881_g21362_i0 PRJNA781427 22238 509 1.256881 6.39752429 Mycoplasmopsis cynos 171284 Bacteria Bacteria 52.8 0.05   NTclustered gi|2639809411|gb|CP141046.1| 171284 g21362 i0 100 0.385068762278978 28 0 6 0 481 508 531868 531841 Mycoplasmopsis cynos strain 30510 chromosome blastn 196 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;