RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA781427" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA781427 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13513672 13513672 PRJNA781427_P_NODE_10211_length_832_cov_2.810277_g9493_i0 PRJNA781427 10211 832 2.810277 23.38150464 Sporanauta perivermis 1261140 Fungi Fungi 448 9.139999999999999e-121   NTclustered gi|422313306|gb|KC172651.1| 1261140 g9493 i0 77.399 17.265625 792 149 93 27 2 777 420 1197 Sporanauta perivermis 18S ribosomal RNA gene, partial sequence blastn 14365 448 1 Eukaryota Opisthokonta Fungi Microsporidia       Sporanauta Sporanauta perivermis
19887038 19887038 PRJNA781427_P_NODE_24976_length_475_cov_0.955224_g24097_i0 PRJNA781427 24976 475 0.955224 4.537314 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 435 3.93e-117   NTclustered gi|2522768008|gb|OR162445.1| 646526 g24097 i0 85.68 1.53894736842105 419 53 88 7 60 475 3012 2598 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 731 435 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei
25438276 25438276 PRJNA781427_P_NODE_20080_length_541_cov_3.299145_g19215_i0 PRJNA781427 20080 541 3.299145 17.84837445 Encephalitozoon 6033 Fungi Fungi 211 8.29e-50   NTclustered gi|3426080|emb|AJ005581.1| 6035 g19215 i0 75.73 14.6894639556377 445 94 81 14 50 486 3618 4056 Encephalitozoon cuniculi complete rDNA unit (16S, 5.8S, 23S, ITS1 and IGS) blastn 7947 211 1 Eukaryota Opisthokonta Fungi Microsporidia     Unikaryonidae Encephalitozoon Encephalitozoon cuniculi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;