RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA781427" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781427 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4590118 4590118 PRJNA781427_P_NODE_88384_length_245_cov_0.895349_g87500_i0 PRJNA781427 88384 245 0.895349 2.19360505 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 132 2.76e-26   NTclustered gi|2893356066|emb|OZ220489.1| 3022862 g87500 i0 91.579 4.28979591836735 95 8 39 0 8 102 1190627 1190533 MAG: Tepidiformaceae bacterium isolate fe7a5560-ebd3-4005-b60b-c4614588a40b genome assembly, chromosome: 1 blastn 1051 132 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
12240834 12240834 PRJNA781427_P_NODE_63090_length_279_cov_1.393204_g62206_i0 PRJNA781427 63090 279 1.393204 3.88703916 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 56.5 0.002   NTclustered gi|2531976022|emb|OY282355.1| 498747 g62206 i0 100 0.10752688172043 30 0 11 0 232 261 2247801 2247772 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
16064277 16064277 PRJNA781427_P_NODE_86273_length_246_cov_0.890173_g85389_i0 PRJNA781427 86273 246 0.890173 2.18982558 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 58.4 4.78e-4   NTclustered gi|2626282194|emb|OY839116.1| 2026734 g85389 i0 97.059 0.25609756097561 34 1 14 0 154 187 2816596 2816629 MAG: Dehalococcoidia bacterium isolate 44b3abb6-b6b9-4f11-be96-93ee54cc77f6 genome assembly, chromosome: 1 blastn 63 58.4 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
19888687 19888687 PRJNA781427_P_NODE_88116_length_245_cov_0.895349_g87232_i0 PRJNA781427 88116 245 0.895349 2.19360505 Chloroflexota bacterium 2026724 Bacteria Bacteria 52.8 0.022   NTclustered gi|2108256157|gb|CP070688.1| 2026724 g87232 i0 96.875 0.130612244897959 32 0 13 1 63 93 1702230 1702199 MAG: Chloroflexi bacterium isolate bin634 chromosome blastn 32 52.8 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
22439383 22439383 PRJNA781427_P_NODE_96598_length_241_cov_0.916667_g95714_i0 PRJNA781427 96598 241 0.916667 2.20916747 Chloroflexota bacterium 2026724 Bacteria Bacteria 324 4.16e-84   NTclustered gi|2107952176|gb|CP070793.1| 2026724 g95714 i0 91.176 0.987551867219917 238 21 99 0 1 238 955035 955272 MAG: Chloroflexi bacterium isolate bin1433 chromosome blastn 238 324 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
24988533 24988533 PRJNA781427_P_NODE_97020_length_241_cov_0.916667_g96136_i0 PRJNA781427 97020 241 0.916667 2.20916747 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 52.8 0.022   NTclustered gi|2518551288|emb|OX638345.1| 498747 g96136 i0 100 0.116182572614108 28 0 12 0 21 48 243061 243034 MAG: uncultured Dehalococcoidia bacterium isolate 64bd3295-a2ac-4bb0-a587-f708157bf7f0 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;